PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G330400.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 894aa    MW: 102801 Da    PI: 8.6093
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G330400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR162.41.3e-19135224291
               FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                        fYneYAk  GFsvrk++++    +g++ +r+f Cs+ g+r+++ ++ ++++++ r  tr++C a l++  ++  ++w v ++++eH+H lap
  Aqcoe7G330400.1.p 135 FYNEYAKFKGFSVRKDHKTVI--KGKTCRRRFICSCAGQRANKWSNlQRRRKKARRLTRCDCPALLNIVYSEeVNTWIVLDFKSEHSHVLAP 224
                        9**************997766..8889***************99995667777999***********9999889**************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.7E-17135224IPR004330FAR1 DNA binding domain
PfamPF105518.4E-33345439IPR018289MULE transposase domain
PROSITE profilePS5096610.658623659IPR007527Zinc finger, SWIM-type
SMARTSM005751.0E-5634661IPR006564Zinc finger, PMZ-type
PfamPF044345.7E-6635657IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 894 aa     Download sequence    Send to blast
MGFRIEHLRS ECFHLLYQLK TVFYKTKLQA LSPFVLLPAN QRIPLCFSLK GNNFSHWSYC  60
SRYHIMSTYN VDEFVEEFSD DDSEAESEIP RRRNIDLLCQ VGVRLQQEIH EDMGQFSDAD  120
ILDARFDTDE EAYLFYNEYA KFKGFSVRKD HKTVIKGKTC RRRFICSCAG QRANKWSNLQ  180
RRRKKARRLT RCDCPALLNI VYSEEVNTWI VLDFKSEHSH VLAPTDGSQF LRSHRKVSVS  240
NALLAEGLYG LGVSKKKVMD LIVARAGSHA AAGCTKRDLY NQMNRSRVER ILDGDANVVN  300
AYMEDMSMND PGFFKKHQVN EKQQLTKLFW SDSQSQEDYK LFGDVLLFDS TYRTNRYGMP  360
LVVFAGVNNH RHTVIFALAL MNTETIESYI WALEAFIAAM DNVAPKSVIT DGDAAIRSSI  420
ETVLPNSKHR LCVWHVVQNS LTNVRTQGFH KDFVDVMFCK GPPENFEKKW GELLTKFNNV  480
AKKKWVHNIY LKKEMWAKGY LREYFFAGCR SNQRCESINS VVRLCVKAGL TLIELVERLL  540
IKVKYIRHRD FEAEVNTMMT RSAQIPNLSR IGERAEALYT RAGYEYLYKQ LLHEPSYVVN  600
ETYEDGVNIK YLVNRHMYPN SPQTVEYMRD TDAYKCSCKL FERVGFICRH ILAVLKHTHV  660
SQIPKSCILH RWTRDAKSSS MTDVRTNSSS WMLGSGLRLN DLEDCARELF MWACESVQRC  720
GRVKSHIAAF DKGESEEVAQ GLNQTPILDN PMGVEEKRAS TPTHVGLPPD NITDPPLYRG  780
KRVAKRKIWQ RCTTRCGICL IVGHTRRTCP SETDPVDNMT ETGETMGVDA DVEKELNVRR  840
TFTCSLCKTV VHRKNAASCP MRQQSTDLAV TDMGNAYLHR EPNGSTYWSL KDD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5EJ870.0A0A2G5EJ87_AQUCA; Uncharacterized protein
STRINGAquca_007_00263.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-87FAR1-related sequence 5