PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G333000.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family CO-like
Protein Properties Length: 407aa    MW: 44933.6 Da    PI: 5.6526
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G333000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.81.9e-072060438
           zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                       + C+ +++  + lfC+ ++ +lC  C +++H        H+
  Aqcoe7G333000.1.p 20 KPCDSCKSSSALLFCRADSAFLCIGCDSKIHTAnklasrHE 60
                       68******99*********************5456666666 PP
2zf-B_box24.84.5e-0862104339
           zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 
                         ++C+ +e+ +++  C+ +   lC +C   +H+       H++
  Aqcoe7G333000.1.p  62 VWMCEVCEQAPASVTCKADAAALCVTCDRDIHSAnplarrHER 104
                        689*****************************65777777775 PP
3CCT70.34.9e-24334377144
                CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                        Rea+++RY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  Aqcoe7G333000.1.p 334 REARVMRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 377
                        9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.0E-111764IPR000315B-box-type zinc finger
PROSITE profilePS5011910.2391764IPR000315B-box-type zinc finger
PfamPF006431.2E-52061IPR000315B-box-type zinc finger
CDDcd000217.03E-72164No hitNo description
PROSITE profilePS5011910.77960107IPR000315B-box-type zinc finger
PfamPF006433.3E-662106IPR000315B-box-type zinc finger
CDDcd000211.63E-863107No hitNo description
SMARTSM003361.6E-1065107IPR000315B-box-type zinc finger
PROSITE profilePS5101716.896334376IPR010402CCT domain
PfamPF062032.8E-18334376IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MKIDEGSGKV FAASWSLSAK PCDSCKSSSA LLFCRADSAF LCIGCDSKIH TANKLASRHE  60
RVWMCEVCEQ APASVTCKAD AAALCVTCDR DIHSANPLAR RHERFPVVPF YESAASAIKS  120
NAVNLLVPDE SEHNNEDLDE DDDDEEDDDD HQNNNKNHHH AATGGVVVTC REEAEAASWL  180
LPNPNHNNKL METPDLNCAD QYFFSDVDPY LDLDYSSPLT GRYHNSSGTG NDSVVPVQVP  240
DHHHHQSAFI HHHEMDFCRS TKPSYNSYTT PSLSQSVSSS SMDVGVVPDG NCNAMTDISN  300
PFVNGTTTTT TAEFNGTVPT GVVNQASQLT GMDREARVMR YREKRKNRKF EKTIRYASRK  360
AYAETRPRIK GRFAKRTEIE AEVDRIYSSA SCLMNDTSGY GIVPTF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010259762.11e-172PREDICTED: zinc finger protein CONSTANS-LIKE 5-like
SwissprotQ940T91e-101COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLA0A2G5CBC30.0A0A2G5CBC3_AQUCA; Uncharacterized protein
STRINGAquca_068_00006.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.11e-95CONSTANS-like 4