PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G345400.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family AP2
Protein Properties Length: 349aa    MW: 39531.9 Da    PI: 8.2777
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G345400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.11e-1344102255
                AP2   2 gykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         ++GV++++++gr++A+++d  ++n    k+ ++++lg +  +e Aa  ++ a++k++g
  Aqcoe7G345400.1.p  44 IFRGVTRHRWTGRYEAHLWDkSCWNEsqkKKgRQVYLGAYNDEEAAAHTYDLAALKYWG 102
                        69******************999977776447*************************98 PP
2AP251.32.9e-16145196155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Aqcoe7G345400.1.p 145 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 196
                        89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.62E-1843112No hitNo description
SuperFamilySSF541711.31E-1543112IPR016177DNA-binding domain
PROSITE profilePS5103219.13744110IPR001471AP2/ERF domain
PfamPF008471.1E-1044102IPR001471AP2/ERF domain
SMARTSM003801.5E-2444116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-1444111IPR001471AP2/ERF domain
PRINTSPR003671.3E-54556IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-18145206IPR016177DNA-binding domain
CDDcd000186.01E-24145206No hitNo description
PfamPF008475.4E-12145196IPR001471AP2/ERF domain
PROSITE profilePS5103218.334146204IPR001471AP2/ERF domain
SMARTSM003801.2E-24146210IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-17146205IPR001471AP2/ERF domain
PRINTSPR003671.3E-5186206IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MAKISQQNQK ITVNNIKTND ETITKVKRKR KSVPRDSPPQ RSSIFRGVTR HRWTGRYEAH  60
LWDKSCWNES QKKKGRQVYL GAYNDEEAAA HTYDLAALKY WGPETILNFP VSTYQGELEE  120
MESQSREEYI GSLRRKSSGF SRGVSKYRGV ARHHHNGRWE ARIGRVFGNK YLYLGTYATQ  180
EEAATAYDMA AIEYRGLNAV TNFDLSRYIK WLRPNPTDSK TNNSSPDSHL AATPTEDIGI  240
GILNHQTSIT SKMVVGQPRP TGGSSASSAL GLLFQSSKFK EMLERTSSVD YPYPSTPPES  300
DPPRCSFPEE IQTYFECQDS DSYVEGNDII FCDLNTFSSP TFQHELET*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028051280.10.0AP2-like ethylene-responsive transcription factor At1g16060 isoform X1
RefseqXP_028051281.10.0AP2-like ethylene-responsive transcription factor At1g16060 isoform X2
SwissprotQ94AN41e-122AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A2G5DR680.0A0A2G5DR68_AQUCA; Uncharacterized protein
STRINGAquca_016_00348.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-102ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]