PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G362900.2.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family ARR-B
Protein Properties Length: 709aa    MW: 77223.9 Da    PI: 6.7353
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G362900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.23.6e-28212265155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        kpr++W+ eLH++Fv av+qL G++kA+Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  Aqcoe7G362900.2.p 212 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKKILDLMNVDRLTRENVASHLQKYRL 265
                        79*******************.********************************8 PP
2Response_reg74.25.2e-25251331109
                        EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS
       Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 
                        vl vdD+ + +++l+++l   +y +v++++++  al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++++g+++ + + +
  Aqcoe7G362900.2.p  25 VLAVDDDSTCLKVLERLLLTCKY-DVTTTTHAATALKMLRENRnnFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSGNGDPKNVMKGI 114
                        799********************.***************999889*******************87754.558******************* PP

                        HTTESEEEESS--HHHHHH CS
       Response_reg  91 kaGakdflsKpfdpeelvk 109
                          Ga d+l Kp+ +eel +
  Aqcoe7G362900.2.p 115 THGACDYLLKPVRIEELKN 133
                        ****************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363924.4E-1641708IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23001.1E-4222164No hitNo description
SuperFamilySSF521722.28E-3522147IPR011006CheY-like superfamily
SMARTSM004481.2E-3123135IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.32824139IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.0E-2225133IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.93E-2326139No hitNo description
Gene3DG3DSA:1.10.10.603.1E-30209270IPR009057Homeodomain-like
PROSITE profilePS5129413.038209268IPR017930Myb domain
SuperFamilySSF466899.85E-20210269IPR009057Homeodomain-like
TIGRFAMsTIGR015577.0E-25212265IPR006447Myb domain, plants
PfamPF002491.6E-6214264IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MTVEERRNSV NDNERNDRFP AGMRVLAVDD DSTCLKVLER LLLTCKYDVT TTTHAATALK  60
MLRENRNNFD LVISDVHMPD MDGFKLLELV GLEMDLPVIM LSGNGDPKNV MKGITHGACD  120
YLLKPVRIEE LKNIWQHVIR KKKHNPKGQA NSDNSEKPHP GTSEGGQASS AAGHTDRNKL  180
NRKRKDQDED EDEDDDFEES GQENEDPSAQ KKPRVVWSVE LHRKFVAAVN QLGIDKAVPK  240
KILDLMNVDR LTRENVASHL QKYRLYLKRI SCVASQQANM VAALGGKDAS YLRMGSLDGM  300
GDFHTLSGSG QLSNASFSSF PPGGMLGRLN TPTGLGLRGL ASSGMIQLGH SPNSSNSFSD  360
MGKLQSTILP GNQNGNLLKG GPTSLEVNHL QQNKFNSHAG DFTPIGDPTL FPLSSSGFPE  420
AGVTISNSSN SLVNPSNSPL LLQGNLQQVQ NHRSFGNQTS VSMSSNNPEP FDIGAGVSTH  480
LPDHGRCADN WQGAVPLTGF SSNPFPLGDP FDNADMITSH MRDNFSSIAS NGRNNSLDAS  540
STSVLSSSLH NSRRDPQCQG GSVGINVQHD NLKASSFGSI GNRVGLNTNY MQQNREDNRR  600
DYTNNTNLLY NSVNSSVPIQ GAMGPFGQNL GQENTVATRK IDSPLISQSN SSNQFLMQQM  660
GYENSPTEST MRFKGDYQMD QAKSQSGFVN SNSGSLEDMM NAMIKRVK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-27208271164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010275724.10.0PREDICTED: two-component response regulator ORR24-like
SwissprotQ6K8X61e-150ORR23_ORYSJ; Two-component response regulator ORR23
TrEMBLA0A2G5DQF00.0A0A2G5DQF0_AQUCA; Uncharacterized protein
STRINGAquca_016_00168.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-129response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]