PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe7G386400.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

YABBY

Protein Properties

Length: 187aa MW: 20919.8 Da PI: 7.7722

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe7G386400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	208.5	2.4e-64	7	159	5	170
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 seqvCy+ CnfCn ilavsvP +slf +vtvrCGhCt+l svn+a a q l+ ++ +++ + ++++++ + +++s+ +++ Aqcoe7G386400.1.p 7 VPSEQVCYIPCNFCNIILAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAALQSLSWQDL-QTQSFP-------LQDHKIDHQLGSTSSKCNKI 90 579*******************************************9999999884.443333.......33333333333333344444 PP YABBY 97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 s+ + +n++e + rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+i fgl Aqcoe7G386400.1.p 91 SMLSSATNNEERII-----HRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIQFGL 159 44332344444444.....6**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.9E-71	8	159	IPR006780	YABBY protein
SuperFamily	SSF47095	1.01E-8	95	153	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.4E-4	107	153	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MSSCTNVPSE QVCYIPCNFC NIILAVSVPC SSLFDIVTVR CGHCTNLWSV NMAAALQSLS 60 WQDLQTQSFP LQDHKIDHQL GSTSSKCNKI SMLSSATNNE ERIIHRPPEK RQRVPSAYNQ 120 FIKEEIQRIK ANNPDISHRE AFSTAAKNWA HFPHIQFGLM LEANNQAKMN EGAEKHLMTT 180 AALFNN*

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010254434.1	1e-108	PREDICTED: axial regulator YABBY 5-like
Swissprot	Q8GW46	4e-84	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A2G5DFW9	1e-137	A0A2G5DFW9_AQUCA; Uncharacterized protein
STRING	Aquca_020_00105.1	1e-130	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	2e-86	YABBY family protein

Link Out ? help Back to Top
Phytozome	Aqcoe7G386400.1.p

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]