PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe7G386400.2.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

YABBY

Protein Properties

Length: 178aa MW: 20012.7 Da PI: 8.3584

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe7G386400.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	178.4	4.2e-55	13	150	20	170
YABBY 20 tilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevpr 111 l+vsvP +slf +vtvrCGhCt+l svn+a a q l+ ++ +++ + ++++++ + +++s+ +++s+ + +n++e + Aqcoe7G386400.2.p 13 LFLLVSVPCSSLFDIVTVRCGHCTNLWSVNMAAALQSLSWQDL-QTQSFP-------LQDHKIDHQLGSTSSKCNKISMLSSATNNEERII- 95 5799***************************9999999884.443333.......3333333333333334444444332344444444. PP YABBY 112 vppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+i fgl Aqcoe7G386400.2.p 96 ----HRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIQFGL 150 ....6**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.9E-61	9	150	IPR006780	YABBY protein
SuperFamily	SSF47095	9.16E-9	86	144	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.2E-4	98	144	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MRVSSYLGNQ SDLFLLVSVP CSSLFDIVTV RCGHCTNLWS VNMAAALQSL SWQDLQTQSF 60 PLQDHKIDHQ LGSTSSKCNK ISMLSSATNN EERIIHRPPE KRQRVPSAYN QFIKEEIQRI 120 KANNPDISHR EAFSTAAKNW AHFPHIQFGL MLEANNQAKM NEGAEKHLMT TAALFNN*

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010254434.1	2e-91	PREDICTED: axial regulator YABBY 5-like
Swissprot	Q8GW46	3e-72	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A2G5DG19	1e-130	A0A2G5DG19_AQUCA; Uncharacterized protein
STRING	Aquca_020_00105.1	1e-131	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	1e-74	YABBY family protein

Link Out ? help Back to Top
Phytozome	Aqcoe7G386400.2.p

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]