PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G387100.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C2H2
Protein Properties Length: 358aa    MW: 41261.6 Da    PI: 6.254
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G387100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.8e-0577101123
                        EEET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                        ++C+   Cgk F ++  L+rH   H
  Aqcoe7G387100.1.p  77 HVCEyeGCGKKFVDSTKLRRHTIIH 101
                        789999***************9887 PP
2zf-C2H221.85e-07108131223
                        EET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   2 kCp..dCgksFsrksnLkrHirtH 23 
                        +C+   Cgk F  ++nL++H++tH
  Aqcoe7G387100.1.p 108 VCTheGCGKAFALPYNLRVHMKTH 131
                        78899******************9 PP
3zf-C2H211.30.0011137162123
                        EEET..TTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                        + Cp  dC+k++   + L++Hi   H
  Aqcoe7G387100.1.p 137 HICPyeDCHKRYAFDYKLQSHILArH 162
                        68********************8777 PP
4zf-C2H216.13.1e-05178202123
                        EEET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                        y+Cp  dC+k +   + L+ H+++H
  Aqcoe7G387100.1.p 178 YVCPyeDCDKAYVYEYKLTLHLNRH 202
                        9***********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.2244877IPR007087Zinc finger, C2H2
SMARTSM003550.814872IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.8E-64873IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002805072IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.0E-117697IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015714.6977106IPR007087Zinc finger, C2H2
SMARTSM003550.002977101IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028079101IPR007087Zinc finger, C2H2
SuperFamilySSF576671.07E-1488141No hitNo description
Gene3DG3DSA:3.30.160.606.9E-1898133IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.741107136IPR007087Zinc finger, C2H2
SMARTSM003550.0047107131IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280109131IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.1E-5134158IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551.3137162IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280139162IPR007087Zinc finger, C2H2
SuperFamilySSF576672.68E-5175204No hitNo description
Gene3DG3DSA:3.30.160.603.0E-7177202IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.099178207IPR007087Zinc finger, C2H2
SMARTSM003550.024178202IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280180203IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MNKEMVMHTD EKTLDNKCTK SKPRARRAKW EKEFVPSPGN ELNAEVILLC GIEGCGKMYN  60
DVESSRRHYR THAEPKHVCE YEGCGKKFVD STKLRRHTII HTGERPCVCT HEGCGKAFAL  120
PYNLRVHMKT HKQENYHICP YEDCHKRYAF DYKLQSHILA RHEKDRDGAK KERQIYPYVC  180
PYEDCDKAYV YEYKLTLHLN RHHPLRNIEP ESEIDDDMEE GSDKVVSHKR KQSKQVADDT  240
VDAHHRRKRK LNDDDMGAMG ENSHEIDIYP RKQQDPKLQA SRIPPLKIKL GTSSNVSHAG  300
INVLTQQWQG NGVHDENSDD AEENDNGEDS ENTEEDGSGG DSEETAEEYD DVNNHES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C2e-30482072122PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228249KRKQSKQVADDTVDAHHRRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5DFY40.0A0A2G5DFY4_AQUCA; Uncharacterized protein
STRINGAquca_020_00111.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.22e-63C2H2 family protein