PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe7G391600.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

C3H

Protein Properties

Length: 592aa MW: 67728.4 Da PI: 6.4145

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe7G391600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.8	2.8e-06	89	111	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C f++ G+C+ Gd+C+F Hgp Aqcoe7G391600.1.p 89 VPCYFYFN-GFCNKGDNCSFQHGP 111 69****.***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	10.887	6	35	IPR000571	Zinc finger, CCCH-type
Pfam	PF15663	6.0E-12	6	64	No hit	No description
SMART	SM00356	0.0015	7	34	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	10.174	37	63	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.55	39	62	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.887	85	112	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.19E-6	86	110	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0018	86	111	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 592 aa Download sequence Send to blast
MEDELQKRNT DCVYFLASPL TCKKGAECEY RHSEMARLNP RDCWYWLAGS CLNPTCAFRH 60 PPIEGRPENP SESSSLPQQA SVPVSKSNVP CYFYFNGFCN KGDNCSFQHG PNIATSGQFL 120 KPSSLVSDVH LSENKALASN EGISTLTEPP CNHLETTKMG QSIQFQSKIE FQPSISNNIL 180 QQSPSPRNSL PESDEAIIKS EILLPAPNLR SPRSEERPLL CADQSSEDQF DGHIEPDERG 240 ESSPGFDVLV DDGSENLGFE DDQEYLVAHK MDDRVLHEHL LPYEYEHHVG YDPGEYPESR 300 LMYEHDMYGS YEHHEDDHIS DHVRRVPKRS REMMRNGVVL QKGQLLPREV DFNNRNGTDL 360 RNHLSKRRRV TSHRSSKRSR LQEIPYSNMN GRVQERLHSN KNGRIQERLG RRHNRQPLQG 420 RLASEASSDM LGGHTENDSN QRDLPRQSYP RYIRSKHQER ERRRQARPQL IFSENSRGNS 480 ASREAQPFQD SPTVFTGPKT LAQIKEEKRK ARQNRDGFSS PTHNVTTTLQ NFEGPKPLSE 540 ILKDKRRLGS TSDDNTSSRS RHNHSESERN YIGFDIDNDD LLDEYGDDDE A*

Sequence ? help Back to Top

Protein Sequence Length: 592 aa Download sequence Send to blast

MEDELQKRNT DCVYFLASPL TCKKGAECEY RHSEMARLNP RDCWYWLAGS CLNPTCAFRH  60
PPIEGRPENP SESSSLPQQA SVPVSKSNVP CYFYFNGFCN KGDNCSFQHG PNIATSGQFL  120
KPSSLVSDVH LSENKALASN EGISTLTEPP CNHLETTKMG QSIQFQSKIE FQPSISNNIL  180
QQSPSPRNSL PESDEAIIKS EILLPAPNLR SPRSEERPLL CADQSSEDQF DGHIEPDERG  240
ESSPGFDVLV DDGSENLGFE DDQEYLVAHK MDDRVLHEHL LPYEYEHHVG YDPGEYPESR  300
LMYEHDMYGS YEHHEDDHIS DHVRRVPKRS REMMRNGVVL QKGQLLPREV DFNNRNGTDL  360
RNHLSKRRRV TSHRSSKRSR LQEIPYSNMN GRVQERLHSN KNGRIQERLG RRHNRQPLQG  420
RLASEASSDM LGGHTENDSN QRDLPRQSYP RYIRSKHQER ERRRQARPQL IFSENSRGNS  480
ASREAQPFQD SPTVFTGPKT LAQIKEEKRK ARQNRDGFSS PTHNVTTTLQ NFEGPKPLSE  540
ILKDKRRLGS TSDDNTSSRS RHNHSESERN YIGFDIDNDD LLDEYGDDDE A*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	365	369	KRRRV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010250030.1	1e-164	PREDICTED: zinc finger CCCH domain-containing protein 32-like
TrEMBL	A0A2G5DG60	0.0	A0A2G5DG60_AQUCA; Uncharacterized protein
STRING	Aquca_020_00150.1	0.0	(Aquilegia coerulea)

Link Out ? help Back to Top
Phytozome	Aqcoe7G391600.1.p