PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe7G417300.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

C3H

Protein Properties

Length: 249aa MW: 28545.6 Da PI: 8.3632

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe7G417300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.1	2.3e-06	96	116	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f+ G+Ck G+ C +aHg Aqcoe7G417300.1.p 96 PCPDFRG-GICKKGNACEYAHG 116 6777765.*************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	11.751	91	118	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0071	91	117	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.1E-4	94	118	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.7E-4	95	116	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MTVMLREKTR PITSVHFPPW LHLDEITAQI VMNNPLYDEF NISVYDFKCD DFYMYEFKVR 60 RCGLNRSHDW TECPFAHPGE KAQRRDPKKF YYSGDPCPDF RGGICKKGNA CEYAHGVFEC 120 WLHPARYRTQ WCKDGTSCCR SVCFFAHTYQ QLRLTAASPS ICKDLLSQHS SKSPKGCSLL 180 FSTTSSTLTS PALSSSSNAS LVDDMLLTLR TLQLNRKEEP VMERVESGKY LRAEIYEKLS 240 KQNSLRVS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024996928.1	4e-75	zinc finger CCCH domain-containing protein 20-like
Swissprot	Q9M0G2	9e-65	C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBL	A0A2G5DH94	1e-135	A0A2G5DH94_AQUCA; Uncharacterized protein
STRING	Aquca_020_00374.1	1e-135	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29190.1	3e-60	C3H family protein

Link Out ? help Back to Top
Phytozome	Aqcoe7G417300.1.p

Publications ? help Back to Top
Dokládal L, et al. cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase. Front Plant Sci, 2015. 6: p. 985 [PMID:26617625] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]