PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G425200.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MYB
Protein Properties Length: 318aa    MW: 35493.7 Da    PI: 6.0855
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G425200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81e-171461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg W++eEde+l++++  +G g+W++++r  g+ R++k+c++rw +yl
  Aqcoe7G425200.1.p 14 RGLWSPEEDEKLINYISTYGHGCWSSVPRLAGLQRCGKSCRLRWINYL 61
                       788*******************************************97 PP
2Myb_DNA-binding47.25.1e-1567109145
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                        rg+++ +E  l++++++ lG++ W+ Ia++++ gRt++++k++w+
  Aqcoe7G425200.1.p  67 RGSFSRQEASLIIELHRILGNR-WAQIAKHLP-GRTDNEVKNFWN 109
                        899*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-26564IPR009057Homeodomain-like
PROSITE profilePS5129424.478965IPR017930Myb domain
SuperFamilySSF466897.86E-2912108IPR009057Homeodomain-like
SMARTSM007172.0E-131363IPR001005SANT/Myb domain
PfamPF002498.3E-161461IPR001005SANT/Myb domain
CDDcd001672.21E-121761No hitNo description
Gene3DG3DSA:1.10.10.604.3E-2465116IPR009057Homeodomain-like
PROSITE profilePS5129419.76566116IPR017930Myb domain
SMARTSM007173.3E-1566114IPR001005SANT/Myb domain
PfamPF002491.3E-1367110IPR001005SANT/Myb domain
CDDcd001672.84E-1169109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0009901Biological Processanther dehiscence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MGHHTCCNKQ KVRRGLWSPE EDEKLINYIS TYGHGCWSSV PRLAGLQRCG KSCRLRWINY  60
LRPDLKRGSF SRQEASLIIE LHRILGNRWA QIAKHLPGRT DNEVKNFWNS SIKKKLLISN  120
HVVPDPTPIP AIFSNSIGST NQDLLSYNPN SNSMTGDSPY IPSATSTTLQ YGFDDGLYKT  180
DTTSYNIDWV NLAAAPSQSL IDATSFYVPT WSLSYDSHPN QYEQSTLVDG FPHEAIPQFG  240
KDESSSLDAN STIVSYNDDA KLYEMVNVGD QCCMPSSSSL NEEIDTSIST TTTKLPFFPL  300
PPYIYDPLQA NQTMGVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-31141167108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021649973.12e-89transcription factor MYB26-like
TrEMBLA0A2G5DHJ40.0A0A2G5DHJ4_AQUCA; Uncharacterized protein
STRINGAquca_020_00444.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.25e-79myb domain protein 26