PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G433200.5.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family NF-YA
Protein Properties Length: 307aa    MW: 34083.1 Da    PI: 8.174
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G433200.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.48.9e-32153209158
          CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                        dep++VN+KQy+ Il+RRq+Rakle+++kl  k rkpylheSRh hAl+R+Rg++GrF
  Aqcoe7G433200.5.p 153 DEPIFVNSKQYHCILRRRQSRAKLEAQNKL-VKDRKPYLHESRHLHALKRARGCSGRF 209
                        79****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005219.1E-36151212IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.094152212IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.5E-26154209IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.1E-21155177IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860157177IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.1E-21186209IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MHITTKKELD QSCTGPQAPH CSIFKNLVLK MDSSPNNYHV KQFQDQDSTS TQSTGQSHCE  60
GETIGGNTDG KCISGNNEAY KWRANSNNQS VFSQEASHLT FPQSQSIVHM PYPYACPYYG  120
GYLPAIGTQF VMHPQIMGMA PARVQLPPDY GEDEPIFVNS KQYHCILRRR QSRAKLEAQN  180
KLVKDRKPYL HESRHLHALK RARGCSGRFL NKKKLQPSDD DRSALDPASH HMDGSLSEPE  240
VVKSESGNVC TFTTSCASLT SISSKDDLLQ PSKHWLSGYH PHMGENMQDG GGITFNGSQL  300
RVSVLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-19153227277NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010261975.13e-73PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X1
TrEMBLA0A2G5DI150.0A0A2G5DI15_AQUCA; Uncharacterized protein
STRINGAquca_020_00519.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14020.14e-39nuclear factor Y, subunit A6