PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe7G433800.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

FAR1

Protein Properties

Length: 706aa MW: 80304.4 Da PI: 6.3601

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe7G433800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.2	1e-21	112	203	1	90
FAR1 1 kfYneYAkevGFsvrkskskks..krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YA ++GF+vrk +++ s +r e++ r++vCs +g +++++++te +++ r+e rtgCk + ++k++ + w+v+k+ eHnHe+ Aqcoe7G433800.1.p 112 DFYCSYALKTGFRVRKCTTSISrrRRAYEVIGRNYVCSHQGVKDSRSESTECKKKDRVEYRTGCKVYISLRKRNGNMWVVAKFLDEHNHEME 203 6************98776664478899**********************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-18	112	203	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.6E-23	314	405	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.484	545	581	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.0E-6	547	578	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.6E-4	556	583	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 706 aa Download sequence Send to blast
MEVGSQDAGK KIVLQENGND DSDNSPVSVE FVNWSESSVD KDLQNTCDVE ISEGILNEIE 60 RPEGRVDGSL NEAVMTELNL NENETTEGSL NERNESCPRV GMEFKSQEEA YDFYCSYALK 120 TGFRVRKCTT SISRRRRAYE VIGRNYVCSH QGVKDSRSES TECKKKDRVE YRTGCKVYIS 180 LRKRNGNMWV VAKFLDEHNH EMESSSKRQK LHPFKKIREA RRKYLKICNG MAPKAGGNSN 240 VVSIKRDGRN VLTTKRQTEL KKEDVEVMLS YLEKQQMENP SFFYSIQVDS EGQMTNFFWA 300 DAKSRMDYLY FGDVVCFDST CKTNRSEFPF ITILGINHHC QIALFGSALL YNESEESFQW 360 LIRTWMKAMN GKEPKVVLTD YDSGIGEVVK CVFPSSCHRF CSCKIIQIAK KNLADVINTH 420 EGFTHDFTDC LNNSETNTES MLIYFGDCLK GDMPLCEFVK QFENFVIDKR EKEYLADFES 480 NFSVPALRFS IDIEKDAAKV YTKEIFQKFQ DQLFEGISYR HKKVAESGDT STYSVWKTGH 540 EEKVRSVTLD YSSMSAKCSC QLFESAGYLC RHILKIFLVE NVHNLLSQYV LKRWTKDAKS 600 GSVVNDQGES VQPNSCEDVT VENVTGRYSN LCQEAINIAA KGSASVEAYK VAIRCLHDTV 660 KEIEAALKLS TGPTASNKNV GSQNKDNTTR EHLEKSSEGQ TTPPVP

Sequence ? help Back to Top

Protein Sequence Length: 706 aa Download sequence Send to blast

MEVGSQDAGK KIVLQENGND DSDNSPVSVE FVNWSESSVD KDLQNTCDVE ISEGILNEIE  60
RPEGRVDGSL NEAVMTELNL NENETTEGSL NERNESCPRV GMEFKSQEEA YDFYCSYALK  120
TGFRVRKCTT SISRRRRAYE VIGRNYVCSH QGVKDSRSES TECKKKDRVE YRTGCKVYIS  180
LRKRNGNMWV VAKFLDEHNH EMESSSKRQK LHPFKKIREA RRKYLKICNG MAPKAGGNSN  240
VVSIKRDGRN VLTTKRQTEL KKEDVEVMLS YLEKQQMENP SFFYSIQVDS EGQMTNFFWA  300
DAKSRMDYLY FGDVVCFDST CKTNRSEFPF ITILGINHHC QIALFGSALL YNESEESFQW  360
LIRTWMKAMN GKEPKVVLTD YDSGIGEVVK CVFPSSCHRF CSCKIIQIAK KNLADVINTH  420
EGFTHDFTDC LNNSETNTES MLIYFGDCLK GDMPLCEFVK QFENFVIDKR EKEYLADFES  480
NFSVPALRFS IDIEKDAAKV YTKEIFQKFQ DQLFEGISYR HKKVAESGDT STYSVWKTGH  540
EEKVRSVTLD YSSMSAKCSC QLFESAGYLC RHILKIFLVE NVHNLLSQYV LKRWTKDAKS  600
GSVVNDQGES VQPNSCEDVT VENVTGRYSN LCQEAINIAA KGSASVEAYK VAIRCLHDTV  660
KEIEAALKLS TGPTASNKNV GSQNKDNTTR EHLEKSSEGQ TTPPVP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-109	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Aqcoe7G433800.1.p