PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G439900.2.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family ERF
Protein Properties Length: 387aa    MW: 42871.5 Da    PI: 5.0123
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G439900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.6e-19110159255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++a +++++g
  Aqcoe7G439900.2.p 110 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARRIRG 159
                        69*******.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.86E-22110168IPR016177DNA-binding domain
SMARTSM003804.8E-37110173IPR001471AP2/ERF domain
CDDcd000181.09E-32110168No hitNo description
PROSITE profilePS5103223.96110167IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-32110169IPR001471AP2/ERF domain
PRINTSPR003671.2E-11111122IPR001471AP2/ERF domain
PfamPF008474.2E-12111159IPR001471AP2/ERF domain
PRINTSPR003671.2E-11133149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070483Biological Processdetection of hypoxia
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MCGGAIISDF IPTSRSHADY LWPDLKKKKK SKKFSKPSFV PHFVDVNDDD FEADFQGFKD  60
DDSDVTEDEL VQSFSFAPKS ALPREKTTAV KSVEYNGPAE KSAKRKRKNQ YRGIRQRPWG  120
KWAAEIRDPR KGVRVWLGTF NTAEEAARAY DAEARRIRGN KAKVNFPEEN FPTAQNRTVK  180
TNSQKALPKA SQTIENPILN QDFSIMNYSS EGFNDSLGFV EEKPVIKGSG IMSRFAAMKD  240
QNGLQSFTPS DGGALCFTSD QGSNSFNCSD FGWGDHESKT PEITSVLSTT TEGNESAEYM  300
EAANPCKKLK TNSGVAAPFE GNTAKNLSEE LSAFESQMKF LQIPYLEGSW DSSMDSLFSG  360
DTTQDGGNSM DLWSFEDFPQ MVGGVF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-21110167260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00204DAPTransfer from AT1G53910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010261706.11e-154PREDICTED: ethylene-responsive transcription factor RAP2-12
RefseqXP_010261707.11e-154PREDICTED: ethylene-responsive transcription factor RAP2-12
TrEMBLA0A2G5DI800.0A0A2G5DI80_AQUCA; Uncharacterized protein
STRINGAquca_020_00575.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.39e-74related to AP2 12