PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.00IE4
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 99aa    MW: 11442 Da    PI: 9.5036
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.00IE4genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.11.7e-071158247
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                      rWTt   +l+ +a + +  +   +W +Ia  +g g  + ++k r+ ++
      Aradu.00IE4 11 SRWTTKQNKLFENALAIYDEEttdRWYKIAMFVG-GTNEVEVKRRYEML 58
                     59*****************99*************.***********887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.9E-4961IPR001005SANT/Myb domain
SuperFamilySSF466892.89E-111166IPR009057Homeodomain-like
CDDcd001673.30E-51259No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
MASNTLSSPN SRWTTKQNKL FENALAIYDE ETTDRWYKIA MFVGGTNEVE VKRRYEMLLE  60
DIKDIESGKV PLPAYKRNAG CSRVNISNAE QRLRNLKLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-2513981192RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.00IE4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015964020.12e-68protein RADIALIS-like 3
RefseqXP_016182643.12e-68protein RADIALIS-like 3
RefseqXP_025653226.12e-68protein RADIALIS-like 3
RefseqXP_025698856.12e-68protein RADIALIS-like 3
SwissprotF4JVB86e-29RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A444WS073e-62A0A444WS07_ARAHY; Uncharacterized protein
STRINGXP_007156943.15e-47(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-31RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]