PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.00QGP

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

GRAS

Protein Properties

Length: 214aa MW: 24094.7 Da PI: 8.2145

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.00QGP	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	110.4	2.4e-34	31	211	5	181
GRAS 5 LlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 + +cA+ ++ g+ + a+++La++s+las++gd +qRla+yf eAL +l++ s + ++ + +++ ++ e +a lf+e+ P+ ++s+ ++Nqa Aradu.00QGP 31 VRNCAKYIECGNISDADSALAKISHLASSEGDRFQRLATYFSEALTCQLVNrSYLHGAHNILSKPL---STFEDSFAKGLFFELYPFQRVSYAVTNQA 125 568*******************************************999344444444444444...4788889999*************** PP GRAS 102 IleavegeervHiiDfdisq.GlQWpaLlqaLasRpeg..........ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181 I ea+ g + + i+D+++ + +QW+ ++q+L +R ++ p l+iT v++ ++e l +++ rL+ A+++ +fefn + Aradu.00QGP 126 IIEAMTGLQGIQILDLSAPHdATQWVLFMQSLKERCSSssssstrpqqRPYLKITCVHR----NQEVLAQMKLRLTLEADKF-FQFEFNDI 211 *************965489*****99983334555565559******....99**************9.68999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	21.224	1	214	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.3E-32	31	211	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MIIALLGSAH GYPWFKGISS EPRGMLLKIL VRNCAKYIEC GNISDADSAL AKISHLASSE 60 GDRFQRLATY FSEALTCQLV NRSYLHGAHN ILSKPLSTFE DSFAKGLFFE LYPFQRVSYA 120 VTNQAIIEAM TGLQGIQILD LSAPHDATQW VLFMQSLKER CSSSSSSSTR PQQRPYLKIT 180 CVHRNQEVLA QMKLRLTLEA DKFFQFEFND IVSI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.00QGP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025673351.1	1e-142	scarecrow-like protein 3
TrEMBL	A0A445E248	1e-144	A0A445E248_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF28636	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50420.1	1e-39	scarecrow-like 3