PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.011B8
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 612aa    MW: 66953.7 Da    PI: 9.0556
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.011B8genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH322.1e-10217241226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  +++ C ++++ G Ck+G++Ck++H+
  Aradu.011B8 217 GEKDCAYYMQHGSCKFGENCKYNHP 241
                  7889********************9 PP
2zf-CCCH18.24.5e-06551573426
                  ---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                  + C+ +   G+Ck+G+ CkFaH+
  Aradu.011B8 551 SACPEYTCLGICKFGAGCKFAHP 573
                  679999999*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.713215243IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5215242IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-8217241IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-6218243IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.943547575IPR000571Zinc finger, CCCH-type
SMARTSM003560.63548574IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MGNLQTKWAA STVQPAESNS ASSSSSLFTN GSGQQQPPQP PRAPLSSPSD HHQTSQEGAL  60
CGDLKGKLEL KGEGRVGVEA LDQVLNFGQQ GVNGDDRDIE GSKRNSWEDD YVNGSVYDGN  120
CVGAEKRKKR GAGRQTKPAS PMVIEYEKPV KISYLVILSK DSQFNNFDVL TMHYKVAKEQ  180
SQERQEPSER SGQTECKYYP SLPAAELNFL DLPIRPGEKD CAYYMQHGSC KFGENCKYNH  240
PDPTTGGCDP PPMYDNVGSI SFSGVLQQSA SSVSSPGIVN KTSPFLPMML SPTQVSPQDS  300
DWNAYHYQAP ICPYVMSMHP PTHVKNYPAI ETNAYTPQQN QIQVGVDEFA EIPGDSKPKS  360
KRKSYCKKNK LASLPPCNLN DKGLLLRPAP ICPSTMSMHP PKYVMNNSTI KTNAYTPRQK  420
QIQDGVDEFA KIPEDSKSKS KGKSRRQKNK LANLPPSTLN DKGLLLRPAP IKPSVMGIHP  480
PTHVMNNPAI KTKASTPRQK QMQVGVDELA EIPGDSKSKS KRKSHHQKNK LASVPPCTLN  540
NKGLPLKPDK SACPEYTCLG ICKFGAGCKF AHPSNPPPPL TIHSVYQQSY TNSAGVEVAW  600
MGSSDPTIQQ TL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1520524KRKSH
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.011B8
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015965535.10.0zinc finger CCCH domain-containing protein 43
RefseqXP_025703329.10.0zinc finger CCCH domain-containing protein 43
TrEMBLA0A445ER660.0A0A445ER66_ARAHY; Uncharacterized protein
STRINGGLYMA17G13580.12e-60(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2863822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-27C3H family protein