PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.02Q8Q

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 469aa MW: 53513.8 Da PI: 9.506

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.02Q8Q	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	57.3	5e-18	11	97	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk +GFs+r+++++++ +ei+++ +Cs+egk +++ + ++t+++ +C a++ ++ k g w ++k++l+H+H+++p Aradu.02Q8Q 11 KFYRNYAKAAGFSTRVRSTNRK--GNEIKNQLITCSREGKWKSKISP---IEKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 97 6**************98887..8889*********998877...999***********998879*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.1E-15	11	97	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.149	256	292	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.8E-5	258	289	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.6E-4	267	294	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence Send to blast
MTFTTLEEAE KFYRNYAKAA GFSTRVRSTN RKGNEIKNQL ITCSREGKWK SKISPIEKTN 60 PTAGLNCPAR IYIHTLKDVG AWIISKVVLD HSHPCCPSKA EMLKQHKELS MSIRRTIENN 120 EEADRHIWVP IYLDHHFWAG MRSTQRSESM HSFFNKFITR NSSLIQFIKQ YDNCLRSREQ 180 AERESDAADF HTVIPCATKS SIEAQFQDVY THQKFREVQA QFKGKANCIT RLTNSALGYS 240 VYEVGEQVSI SIFNKFVVTY DSVAAEVKCQ CLLFESKGIL CRHALSVLSF EQVKRRHTHI 300 KSSHDEPLME PRSKRFDQLV FCLQNICEFA SESEELTAIL HRAYDNVMAE MESLKAKRKG 360 TSSLSHEDAN LESVTELQRP PRIRTRGHPK NRLGSKLDKQ IANATKNKKT KVLSEINLFD 420 AASVVHSNSS QYQGHVMNYQ FRVPGAGDNS LGFRVLVSKH HGGIDFGSL

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence Send to blast

MTFTTLEEAE KFYRNYAKAA GFSTRVRSTN RKGNEIKNQL ITCSREGKWK SKISPIEKTN  60
PTAGLNCPAR IYIHTLKDVG AWIISKVVLD HSHPCCPSKA EMLKQHKELS MSIRRTIENN  120
EEADRHIWVP IYLDHHFWAG MRSTQRSESM HSFFNKFITR NSSLIQFIKQ YDNCLRSREQ  180
AERESDAADF HTVIPCATKS SIEAQFQDVY THQKFREVQA QFKGKANCIT RLTNSALGYS  240
VYEVGEQVSI SIFNKFVVTY DSVAAEVKCQ CLLFESKGIL CRHALSVLSF EQVKRRHTHI  300
KSSHDEPLME PRSKRFDQLV FCLQNICEFA SESEELTAIL HRAYDNVMAE MESLKAKRKG  360
TSSLSHEDAN LESVTELQRP PRIRTRGHPK NRLGSKLDKQ IANATKNKKT KVLSEINLFD  420
AASVVHSNSS QYQGHVMNYQ FRVPGAGDNS LGFRVLVSKH HGGIDFGSL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.02Q8Q

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020986710.1	0.0	protein FAR-RED ELONGATED HYPOCOTYL 3-like
Refseq	XP_020997233.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A445ESL4	0.0	A0A445ESL4_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	2e-25	far-red elongated hypocotyls 3