PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.065GY

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

bHLH

Protein Properties

Length: 479aa MW: 53683.4 Da PI: 7.2761

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.065GY	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.7	0.00048	374	406	18	55
HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ L++++ + +K + a++L +A+ YIk Lq Aradu.065GY 374 DKITALQQIVSPF-----GKTDTASVLFEAIGYIKFLQ 406 7888889988887.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.343	356	405	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.7E-8	371	413	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-9	371	421	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.36E-4	374	410	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence Send to blast
MWWKLSCNHF SYFIQLVDIS VSTSFTNASN HSTLTVDSSR RLLDPSSNNN HFLPEHADDN 60 HLWNHVLSAV GSNGELQNNE EMGEMKFLDA LSSKNMTSSM FEEPACDYLK KLDTTTSWEY 120 SGGSTSSSFN NSFEKHLNNN NNNNNGFSDD ALIENNERLT KLSNLVSTWS IAPPDPEVSS 180 SHFDHPPTNI NNHHHHDPNC NFKQQVFIGD STSYPPISSY DHPTKVKEEF HHHHQTNSGF 240 QNGLINGLSS VMGGGDSSGN KFYHDLPNLS SCTRNISDVI SFNSRLGRPV LGIHAQKPNI 300 KYINNLSESK KHQGLQTTSP INRSNNGRIE GTTAREVKKK RSEESSEAIL KKPKQDTSTA 360 SSTKVQAPKV KLGDKITALQ QIVSPFGKTD TASVLFEAIG YIKFLQEQVQ LLSNPYLKSN 420 SHKDPWGSLD RKDHHKEDAK LDLRTRGLCL VPTSCTPLIY RENSGPDYWT PAYRGCLYR

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence Send to blast

MWWKLSCNHF SYFIQLVDIS VSTSFTNASN HSTLTVDSSR RLLDPSSNNN HFLPEHADDN  60
HLWNHVLSAV GSNGELQNNE EMGEMKFLDA LSSKNMTSSM FEEPACDYLK KLDTTTSWEY  120
SGGSTSSSFN NSFEKHLNNN NNNNNGFSDD ALIENNERLT KLSNLVSTWS IAPPDPEVSS  180
SHFDHPPTNI NNHHHHDPNC NFKQQVFIGD STSYPPISSY DHPTKVKEEF HHHHQTNSGF  240
QNGLINGLSS VMGGGDSSGN KFYHDLPNLS SCTRNISDVI SFNSRLGRPV LGIHAQKPNI  300
KYINNLSESK KHQGLQTTSP INRSNNGRIE GTTAREVKKK RSEESSEAIL KKPKQDTSTA  360
SSTKVQAPKV KLGDKITALQ QIVSPFGKTD TASVLFEAIG YIKFLQEQVQ LLSNPYLKSN  420
SHKDPWGSLD RKDHHKEDAK LDLRTRGLCL VPTSCTPLIY RENSGPDYWT PAYRGCLYR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.065GY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015942765.1	0.0	transcription factor bHLH111
TrEMBL	A0A445BCR8	0.0	A0A445BCR8_ARAHY; Uncharacterized protein
STRING	GLYMA20G32520.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10116	26	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31050.1	2e-54	bHLH family protein