PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.07I6M
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 942aa    MW: 107996 Da    PI: 9.3064
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.07I6MgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.12.1e-151252171100
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  ffkv   s +l++g+l lpk+f +++g +   +k + l+ ++g +W+v    + ++ ++v+++GWkeFv    ++ g ++ F+++g+s+    v++++
  Aradu.07I6M 125 FFKVI-ISQSLQQGILKLPKNFSRKYGAS--LPKPVFLKPPNGTEWKVDW--TMHDAAVVFENGWKEFVTYYSIDHGHVLKFEYNGNSKL--GVQICD 215
                  66666.678888999***********977..6677***************..********************************997665..899999 PP

                  SS CS
           B3  99 ks 100
                  ks
  Aradu.07I6M 216 KS 217
                  85 PP
2B3482.3e-15468557298
                  EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  fk+   s +l+ g l +p++f++++g     s  + l+ ++g +W+v+   +k++++++l+ GW+eF+    L+ g  + F+++++s+f   v++++
  Aradu.07I6M 468 FKII-LSTTLEDGKLKIPNSFTKKYGDG--LSNPVFLKPPDGTEWKVEW--TKQDDGIFLEHGWNEFAMYYSLDHGHLLFFEYKNTSQF--EVQICE 557
                  4444.488899999***********755..6667***************..********************************998999..898886 PP
3B353.15.8e-17686771195
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                  f  +++ps++++ + + +p kf++++ +k   + t +le    gr+W v++  + ++    +++GWk+F+k+n L++gD++vF+l++ ++  ++v+
  Aradu.07I6M 686 FMVIMKPSYANSYS-MNIPSKFTAKYLKK---QATAILEVhDGGRTWAVTY--SFGK----FSSGWKRFAKDNSLNVGDICVFELTNPKDLYFKVS 771
                  66778888888887.***********544...235666662466*******..5555....789********************987677755555 PP
4B344.43e-14845939198
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkl.iyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  ff + ++++ l+++r ++p  f++++ +k +    ++       +W++kl +y+++++ ++l++GW+ F++  +Lk+gD+++F+l++++++ + v++f
  Aradu.07I6M 845 FFMIIIKPSFLRQRRPSIPAFFIRNYLKK-TH---IVTFKFGETRWRIKLlRYTRYRSPITLSNGWSLFCRGSRLKAGDVCIFELINKEDAAFDVHLF 938
                  7778899999*************988544.33...4444457799****9777999999***************************999998999988 PP

                  - CS
           B3  98 r 98 
                  r
  Aradu.07I6M 939 R 939
                  7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.87E-20118218IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.3E-19119217IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.014124217IPR003340B3 DNA binding domain
CDDcd100171.84E-13124215No hitNo description
SMARTSM010195.4E-14125217IPR003340B3 DNA binding domain
PfamPF023621.6E-12125216IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-12331418IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-11334419IPR015300DNA-binding pseudobarrel domain
CDDcd100179.59E-8337417No hitNo description
PROSITE profilePS508639.883338438IPR003340B3 DNA binding domain
SMARTSM010190.023338426IPR003340B3 DNA binding domain
PfamPF023621.8E-7338417IPR003340B3 DNA binding domain
SuperFamilySSF1019361.37E-19461558IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-19463557IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.31466559IPR003340B3 DNA binding domain
CDDcd100171.67E-13466556No hitNo description
SMARTSM010194.5E-15467559IPR003340B3 DNA binding domain
PfamPF023624.6E-13468557IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.9E-21678774IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-20681779IPR015300DNA-binding pseudobarrel domain
CDDcd100171.65E-19684774No hitNo description
PROSITE profilePS5086313.126685776IPR003340B3 DNA binding domain
SMARTSM010191.3E-17686776IPR003340B3 DNA binding domain
PfamPF023622.7E-14686772IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-16838939IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.41E-15839940IPR015300DNA-binding pseudobarrel domain
CDDcd100171.01E-13844939No hitNo description
SMARTSM010194.9E-9845941IPR003340B3 DNA binding domain
PfamPF023628.2E-12845939IPR003340B3 DNA binding domain
PROSITE profilePS5086312.041845941IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 942 aa     Download sequence    Send to blast
MIKPPRGSTS LSHFLVQFHY NSLSHCISTR HFPHSFATQQ IKKAEVPIIH QLKGPSHHSL  60
SAITQLNSYK LCCNVFPFLW CWIIAHCTVA IRKCNPVGLN QQDPSQTGSS PISHTPSMTS  120
KPVRFFKVII SQSLQQGILK LPKNFSRKYG ASLPKPVFLK PPNGTEWKVD WTMHDAAVVF  180
ENGWKEFVTY YSIDHGHVLK FEYNGNSKLG VQICDKSGLE IKYPFNVNQQ EKVNIIEISD  240
EEVQAFDEMP QRQNNRRKSP KSQLNQRNGN QSQGTSFLKS TSTSIEKELD GDEEDKSKDS  300
ISIKDRKETQ TTSKVTSPLA ETSGTLKEAE KFTSKNPFFI INVTKKFLDQ SRPNVPIDFV  360
KKYLKQKQYA MVRFRNKLWP LKLLPYVTKK ESIRLSTGWN LFAKASELQA GDSLMFTSLD  420
LTPKQSIWDS AMSILHYNIG EPEKLRKMNE EDQATPPPMN NSNAVLFFKI ILSTTLEDGK  480
LKIPNSFTKK YGDGLSNPVF LKPPDGTEWK VEWTKQDDGI FLEHGWNEFA MYYSLDHGHL  540
LFFEYKNTSQ FEVQICEVSG LEIDYPFHVI QQENENIEQI SHEADQVFDD MPQSQNNRMK  600
SPMFYPQPSN TTREVRTSCS LQNLPLIHQI NGDECQGTSF DKSTFASIKK ELDEDIGGST  660
PCPRVERLKQ TLNKATTSKS KQNPSFMVIM KPSYANSYSM NIPSKFTAKY LKKQATAILE  720
VHDGGRTWAV TYSFGKFSSG WKRFAKDNSL NVGDICVFEL TNPKDLYFKV SITRIEEEEL  780
PLSQVEGDRV NCLEPGKVNY VESKSDIMIK VKKETQETSM ATPPGFEPNE EALKEAKKFT  840
SENPFFMIII KPSFLRQRRP SIPAFFIRNY LKKTHIVTFK FGETRWRIKL LRYTRYRSPI  900
TLSNGWSLFC RGSRLKAGDV CIFELINKED AAFDVHLFRC HS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-1266677730144B3 domain-containing transcription factor VRN1
4i1k_B1e-1266677730144B3 domain-containing transcription factor VRN1
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.07I6M
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020988168.10.0B3 domain-containing transcription factor VRN1
TrEMBLA0A444XAP40.0A0A444XAP4_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-35B3 family protein