PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.07VTE
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 204aa    MW: 23598 Da    PI: 9.5393
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.07VTEgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.24.4e-2183172190
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                  +fY++Y  + GF vr ++ +++  +g++++r+ vC++ g+r+ee +k+e+ r +r+ t+  C+a+++ ++++  +kw+v ++ +eH+Hel+
  Aradu.07VTE  83 RFYKTYTMMHGFAVRLDEVRRN-SDGSVIMRQIVCNRAGSRKEEVEKDERIRDHRPLTQGCCRARIRARLDTkIHKWKVVSFYEEHSHELV 172
                  5*****************9998.8999********************9***********************989***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.8E-1883172IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MDAFISYALT KNRNASKDKE RFIEDSIELF MKLNAPQPHS SLKLKEKSKS SSTLHIDPAL  60
SPATTPTIAA TSILFTDEEA VYRFYKTYTM MHGFAVRLDE VRRNSDGSVI MRQIVCNRAG  120
SRKEEVEKDE RIRDHRPLTQ GCCRARIRAR LDTKIHKWKV VSFYEEHSHE LVDPIYVSMM  180
PEYRTFSISD KAQAKNLHDL GIRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.07VTE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016186048.13e-85protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_025636347.13e-85protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A445AL076e-84A0A445AL07_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1715827
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-13FAR1-related sequence 5