PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.09RAX

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 547aa MW: 63126.7 Da PI: 8.8067

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.09RAX	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	57.8	3.5e-18	58	147	1	89
FAR1 1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +fY +YAk++GF +++++++ k+ + +++ + C++eg+re++ k+ + r++ t t+Cka++ v +++ ++ w+v+++el H+H++ Aradu.09RAX 58 EFYASYAKKLGFVTKVRNTNFDkmrKDAKIPINQSLHCTREGYRESRVKA---ATRSNRITATKCKARMYVMLDReKECWVVSRVELRHSHSC 147 6*********998888776655445556699**********999...899999**********99899***********86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.5E-16	58	147	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.223	330	366	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0053	341	368	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 547 aa Download sequence Send to blast
MWHTQVTSGH VNKVDEITDV MRNDELDLRH ELPDYSGLSE EEIPVIGMRF DSLHLAQEFY 60 ASYAKKLGFV TKVRNTNFDK MRKDAKIPIN QSLHCTREGY RESRVKAATR SNRITATKCK 120 ARMYVMLDRE KECWVVSRVE LRHSHSCSAE KAVYYHEYRE LTMHAKCVIT DNDEAGIRPN 180 KTYLALANEV DLYANRRKCV PIFFKSEFWA GMRSTQWSES MHAFYGGYLH CKSGLVQFVH 240 EYDNVLGNKE QKELEDDAAD SKGVIPCIGS TGIERQFQQE YTSNMFRTLQ LEVRKKTECV 300 VRSTKQKGDT ISIKVDEQKV FWGKPVYHTF IVQFDPLSRK SRCECNKFKS VGILCCHILA 360 AWSYYRVDTV PSCYVLPRWS KNVIRKHTYI KSSHDVARSN ESHNLFRHLC SEFYNVAQEF 420 VACEEEAAIL RATLSDAKSK LTDHRASMRS TTLDGTQNTM PTQSTCDGPS RVKTKGRPKV 480 KRLGAELDKS IKKSMEKRKR KSQPDVVDLQ TNNDCQGFVD NRFEDSTIWN SSDGGGFMDL 540 LNSFRHL

Sequence ? help Back to Top

Protein Sequence Length: 547 aa Download sequence Send to blast

MWHTQVTSGH VNKVDEITDV MRNDELDLRH ELPDYSGLSE EEIPVIGMRF DSLHLAQEFY  60
ASYAKKLGFV TKVRNTNFDK MRKDAKIPIN QSLHCTREGY RESRVKAATR SNRITATKCK  120
ARMYVMLDRE KECWVVSRVE LRHSHSCSAE KAVYYHEYRE LTMHAKCVIT DNDEAGIRPN  180
KTYLALANEV DLYANRRKCV PIFFKSEFWA GMRSTQWSES MHAFYGGYLH CKSGLVQFVH  240
EYDNVLGNKE QKELEDDAAD SKGVIPCIGS TGIERQFQQE YTSNMFRTLQ LEVRKKTECV  300
VRSTKQKGDT ISIKVDEQKV FWGKPVYHTF IVQFDPLSRK SRCECNKFKS VGILCCHILA  360
AWSYYRVDTV PSCYVLPRWS KNVIRKHTYI KSSHDVARSN ESHNLFRHLC SEFYNVAQEF  420
VACEEEAAIL RATLSDAKSK LTDHRASMRS TTLDGTQNTM PTQSTCDGPS RVKTKGRPKV  480
KRLGAELDKS IKKSMEKRKR KSQPDVVDLQ TNNDCQGFVD NRFEDSTIWN SSDGGGFMDL  540
LNSFRHL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.09RAX

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015971718.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A444YMA1	0.0	A0A444YMA1_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF23343	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-25	FAR1-related sequence 5