PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.0BA0A
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 471aa    MW: 49342.2 Da    PI: 8.3388
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.0BA0AgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.93e-124974227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                 +++ C ++++tG+C yG+rC+F+H++
  Aradu.0BA0A 49 DEADCIYYLKTGFCGYGSRCRFNHPR 74
                 6799********************96 PP
2zf-CCCH40.54.4e-1395119327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  ++lC++f+rtG Ck+G++Ck++H++
  Aradu.0BA0A  95 QPLCQYFMRTGSCKFGASCKYNHPR 119
                  79*********************96 PP
3zf-CCCH38.42e-12292316226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  ++++C+++++tG+Ck+G++C+++H+
  Aradu.0BA0A 292 DQPECQYYMKTGECKFGPSCRYHHP 316
                  689*********************8 PP
4zf-CCCH31.33.4e-10339363327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                   ++C ++ + G+Ck+G+ CkF H++
  Aradu.0BA0A 339 APPCTHYTQRGICKFGPACKFDHPM 363
                  689********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.5E-54774IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.3144775IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-64975IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-94974IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-55374IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-692119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.07992120IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-1095119IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-695120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-697119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.23290318IPR000571Zinc finger, CCCH-type
SMARTSM003568.4E-6290317IPR000571Zinc finger, CCCH-type
PfamPF006428.1E-10292316IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-6293317IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-5296320IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.737336364IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-6336363IPR000571Zinc finger, CCCH-type
PfamPF006428.1E-8339363IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5340366IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4341361IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MERYGRPGEG PQPDPPPEWN VGAGDTGLEE SMWKLGLGGA TESYPQRPDE ADCIYYLKTG  60
FCGYGSRCRF NHPRDRGAVI GAARSGGEYP ERAGQPLCQY FMRTGSCKFG ASCKYNHPRQ  120
AAGTPTLVSL NYYGYPLRVF GATCKFHHPQ PAGVQIPAPS PVPPVSPLPV QVPSPLYPTV  180
QPPSGPSQQQ YSVLVARPPL LPGSLVQGPY GPVVVSPAMV PFPGWNPYQA QATSPLLPSS  240
TPSNVGPTQL YRITQLPSQA TGYSAPYQPS GPSVDPSGSS TQKENPYPER PDQPECQYYM  300
KTGECKFGPS CRYHHPSDLN APKGNVALSP VGLPLRPGAP PCTHYTQRGI CKFGPACKFD  360
HPMGSLSYSP SASSLADMPV APYPVGSSMG TLAPSSSSSE LRPELASGLS KESVSSRMSS  420
SMSTSSGSVG LTLSTAGPIS QSGTQASAQS SSSSATASSA ATSSAASHTS S
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.0BA0A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1497161e-105BT149716.1 Lotus japonicus clone JCVI-FLLj-12C21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016197136.10.0LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 34
SwissprotQ84W911e-139C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A445ELS80.0A0A445ELS8_ARAHY; Uncharacterized protein
STRINGGLYMA17G02720.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-114C3H family protein