PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.0JL7F

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 473aa MW: 54445.8 Da PI: 9.7417

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.0JL7F	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.4	2e-17	11	95	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +fY++YAk +GFs+r+++++++ +ei+++ +Cs+egk + + + +++t+++ +C a++ ++ k g w ++k++l+H+H++ Aradu.0JL7F 11 RFYRNYAKVAGFSTRVRRTNRK--GNEIKNQLITCSREGKWKYKISP---TEKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPC 95 5**************98877..8889**********99877...8999**********998879************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.5E-15	11	96	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.099	260	296	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.4E-4	262	293	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	7.3E-4	271	298	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence Send to blast
MTFTTLEDAR RFYRNYAKVA GFSTRVRRTN RKGNEIKNQL ITCSREGKWK YKISPTEKTN 60 PTAGLNCPAR IYIHTLKDVG AWIISKVVLD HSHPCYPSKV EMLKQHRELS MSIHRTIENN 120 EEADLYEDRR IWVPIYLDHH FWAGMRSTQR SESMHSFFNK FITRNSSLIQ FVKQYDNCLG 180 SREQAERESD AADFHTVIPC ATKSSIEAQF QDVYTHQKFR EVQAQFRGKA NCITRLTNSS 240 LGYSVYEVGE QVSSSIFNKF VVTYDSVAAE VKCQCLLFDS RGILCRHALS VLSFEQVSQV 300 SPRYILERWS KKVKRRHTHI KSSHDEPLME PRSKRFDQLV FCSQNICEFA SESEELTAIL 360 HRAYDNVMAE MESLKAKRKG TSSLSHEDAN LESVNELQSP LRIRTRGRPK NRLGSKLDKQ 420 IANATKKKKT KVLSEINLFD AASVLHSNSS QYRGHVMNYQ FTVPAAGDNS LGV

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence Send to blast

MTFTTLEDAR RFYRNYAKVA GFSTRVRRTN RKGNEIKNQL ITCSREGKWK YKISPTEKTN  60
PTAGLNCPAR IYIHTLKDVG AWIISKVVLD HSHPCYPSKV EMLKQHRELS MSIHRTIENN  120
EEADLYEDRR IWVPIYLDHH FWAGMRSTQR SESMHSFFNK FITRNSSLIQ FVKQYDNCLG  180
SREQAERESD AADFHTVIPC ATKSSIEAQF QDVYTHQKFR EVQAQFRGKA NCITRLTNSS  240
LGYSVYEVGE QVSSSIFNKF VVTYDSVAAE VKCQCLLFDS RGILCRHALS VLSFEQVSQV  300
SPRYILERWS KKVKRRHTHI KSSHDEPLME PRSKRFDQLV FCSQNICEFA SESEELTAIL  360
HRAYDNVMAE MESLKAKRKG TSSLSHEDAN LESVNELQSP LRIRTRGRPK NRLGSKLDKQ  420
IANATKKKKT KVLSEINLFD AASVLHSNSS QYRGHVMNYQ FTVPAAGDNS LGV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.0JL7F

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020986710.1	0.0	protein FAR-RED ELONGATED HYPOCOTYL 3-like
Refseq	XP_020997233.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A445ET06	0.0	A0A445ET06_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	2e-34	far-red elongated hypocotyls 3