PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.0S3VU
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 488aa    MW: 55935.4 Da    PI: 8.4697
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.0S3VUgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR149.51.4e-1551136190
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                  kfY++YAk +GFs+r+ +++++  ++ei+++  +Cs+egk +++ +    +++t+++   +C a++ ++  k  g w ++k++l+H+ +++
  Aradu.0S3VU  51 KFYRNYAKVAGFSTRVWSTNRK--ENEIKNQLITCSREGKWKSKISL---TEKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLDHSDPCC 136
                  6***************998877..7779**************99887...8999**************998879************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.9E-1351137IPR004330FAR1 DNA binding domain
PfamPF044341.1E-5300333IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.025300336IPR007527Zinc finger, SWIM-type
SMARTSM005758.1E-4311338IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MDDSTSDSQL NQGEVDYEFE YNEVPEPLSV VDDQFVPKVG MTFTTVEDAG KFYRNYAKVA  60
GFSTRVWSTN RKENEIKNQL ITCSREGKWK SKISLTEKTN PTAGLNCPAR IYIHTLKDVG  120
AWIISKVVLD HSDPCCPSKA EMLKQHRELS MSIRRTIENN EEADLYEDCH IWVPICLDHH  180
FWAGMRSTQR SESMHSFFNK FITRNSLLIQ FIKQYDNCLG SREQAERESN AADFHTVIPC  240
ATKSSIEAQF QDVYTHHKFR EVQAQFRGKV NCITRLTNSA LGYSVYEVGE QVSSSIFNKF  300
VVTYDSVAVE IKCQCLLFES RGILCRHALS VLSFEQVSQV SPRYILERWS KKVKRQHTHI  360
KSSHDEPLLE PRSKRFDQLV FRSQNICEFA SESKELTAIL HRAYDNVMAE MESLKAKRKG  420
TSSLSHEDAN MESVNELQSP QRIRTRGRPK NRLGSKLDKQ IANATKKKKT KVLSEFRVPA  480
AGDNSLGV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.0S3VU
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020997233.10.0protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A445DXC70.0A0A445DXC7_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.21e-30far-red elongated hypocotyls 3