PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.0Z09C
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 221aa    MW: 24805.6 Da    PI: 8.229
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.0Z09CgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding262.2e-08331129
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIar 29
                     +g+W+++Ed++l+d+++++G  +W+t ++
      Aradu.0Z09C  3 KGAWSKQEDQKLIDYINKHGDICWRTLPQ 31
                     79******************99***9876 PP
2Myb_DNA-binding52.61.1e-163781147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w++y
      Aradu.0Z09C 37 RGNFAEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSY 81
                     8999******************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.71E-17278IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.4E-9232IPR009057Homeodomain-like
SMARTSM0071732234IPR001005SANT/Myb domain
PfamPF002492.5E-6330IPR001005SANT/Myb domain
PROSITE profilePS5129424.8983286IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-213387IPR009057Homeodomain-like
SMARTSM007172.1E-153684IPR001005SANT/Myb domain
PfamPF002492.6E-153781IPR001005SANT/Myb domain
CDDcd001673.73E-113982No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MNKGAWSKQE DQKLIDYINK HGDICWRTLP QAADLKRGNF AEDEEDLIIK LHALLGNRWS  60
LIAGRLPGRT DNEVKNYWNS YIRRKLISKG IDPNNHRLIT QKNLIPTPPI SDCSKSSSSG  120
LLKKKNKNND EATTNKSNNI DNYGYHQVGS SEEDESNNNN NNNKGLLLPD LNLDLTISIP  180
SSSSAENSDL KPTIHHESNS SGRERNLMMA GNSPPTLLLF Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-1918625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.0Z09C
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2381162e-61KP238116.1 Lablab purpureus MYB-like 2 protein (myb-like2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015948335.11e-127transcription factor MYB8-like
RefseqXP_015960334.11e-127transcription factor MYB8
TrEMBLA0A445DGY51e-123A0A445DGY5_ARAHY; Uncharacterized protein
STRINGGLYMA07G33960.17e-72(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2336023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.13e-53myb domain protein 3