PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.10MDB
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family M-type_MADS
Protein Properties Length: 180aa    MW: 20134.5 Da    PI: 11.3497
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.10MDBgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF31.52.3e-101391692050
                  HHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
       SRF-TF  20 ilKKAeELSvLCdaevaviifsstgklyeys 50 
                  +  K +EL + Cdaev ++ifsst klyey+
  Aradu.10MDB 139 LRNKTKELAIFCDAEVGLVIFSSTTKLYEYA 169
                  55699*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006612.292134172IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-8134149IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-9137172IPR002100Transcription factor, MADS-box
PfamPF003193.0E-8137168IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-8149170IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
RRLANTLPPP NQNPSSPKLF PFPRKFPPNF PNPSAQNWLS LLSYPATHPS PLSRRAKPSC  60
WSPASKPTVR CRLAPTHEVG HQLRFAHRPS LAFVGSSWSL SRSLKPVAVR VIVVEVSKLS  120
PTLQIASFTG LVYKALKALR NKTKELAIFC DAEVGLVIFS STTKLYEYAN TRIIFLDWKT
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.10MDB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2336122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.17e-11AGAMOUS-like 21