PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.10XQ1

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

C3H

Protein Properties

Length: 500aa MW: 54104 Da PI: 4.588

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.10XQ1	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.2	2.1e-11	186	207	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C f+++tG Ck+G +CkF+H+ Aradu.10XQ1 186 DCAFYMKTGNCKFGINCKFNHP 207 7********************8 PP
2	zf-CCCH	27.6	5.1e-09	232	255	2	25
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 ++ +C++++r+G Ck+G Ck++H Aradu.10XQ1 232 GQTECKYYLRSGGCKFGKDCKYNH 255 6789******************** PP
3	zf-CCCH	29.3	1.5e-09	407	433	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG Ck+ ++CkF+H++ Aradu.10XQ1 407 PGEPECSYFLKTGDCKFKSNCKFHHPK 433 5799*********************96 PP
4	zf-CCCH	27.3	6.1e-09	456	478	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 C+++ r+G Ck+G+ Ck+ H+ Aradu.10XQ1 456 NACMHYTRYGLCKFGPACKYDHP 478 57********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	4.84E-6	180	210	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.652	181	209	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.1E-5	181	208	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.6E-9	186	207	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.4E-4	187	207	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.4E-4	230	257	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.164	230	258	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	8.9E-7	232	255	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.62E-5	233	257	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.061	406	434	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.1E-4	406	433	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.2E-7	408	433	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.57E-5	411	436	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.892	452	480	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.2E-4	453	479	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.57E-5	454	481	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	9.2E-7	455	478	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence Send to blast
MEHTESDSAS SSLPNGGGDC ITATQQDPQL APSSNHGTDD PQPSDLYQTA QDGSLSAELQ 60 SKLDLKGLEG VGEEGGEIGD KVSNFGQVGG GVDDGGVTNG DDEVVNGGDE GFKGGGADGD 120 NWGWETNSWE EENVNVGLVD GDYDGLVNEY VDADGGDDVD GVENREEKSG GGRAQHQYPW 180 RPDAQDCAFY MKTGNCKFGI NCKFNHPINR RKNQAVKERP AEREEEQAER PGQTECKYYL 240 RSGGCKFGKD CKYNHTKGKD LTTEEVAELN FLGLPIRLFN HPDPTTVGGS ESSPGNGGSD 300 PSSRYSNGRS NTSSGYSNGG SISLRGVSQQ SVSTWSSPRT VNETSPFVPM MLSPPSPDWN 360 AYQAPTYLSE RSMHPPPPYV MNNPVIETNV YIHPQKRIQL DDFPERPGEP ECSYFLKTGD 420 CKFKSNCKFH HPKNRIATLP PCNLNDKGLP LRPDKNACMH YTRYGLCKFG PACKYDHPIN 480 PVPPTGVEVD GMGGNGGAVQ

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence Send to blast

MEHTESDSAS SSLPNGGGDC ITATQQDPQL APSSNHGTDD PQPSDLYQTA QDGSLSAELQ  60
SKLDLKGLEG VGEEGGEIGD KVSNFGQVGG GVDDGGVTNG DDEVVNGGDE GFKGGGADGD  120
NWGWETNSWE EENVNVGLVD GDYDGLVNEY VDADGGDDVD GVENREEKSG GGRAQHQYPW  180
RPDAQDCAFY MKTGNCKFGI NCKFNHPINR RKNQAVKERP AEREEEQAER PGQTECKYYL  240
RSGGCKFGKD CKYNHTKGKD LTTEEVAELN FLGLPIRLFN HPDPTTVGGS ESSPGNGGSD  300
PSSRYSNGRS NTSSGYSNGG SISLRGVSQQ SVSTWSSPRT VNETSPFVPM MLSPPSPDWN  360
AYQAPTYLSE RSMHPPPPYV MNNPVIETNV YIHPQKRIQL DDFPERPGEP ECSYFLKTGD  420
CKFKSNCKFH HPKNRIATLP PCNLNDKGLP LRPDKNACMH YTRYGLCKFG PACKYDHPIN  480
PVPPTGVEVD GMGGNGGAVQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.10XQ1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	2e-48	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020997346.1	0.0	LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 43-like
Swissprot	Q9STM4	1e-102	C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBL	A0A445EQT6	0.0	A0A445EQT6_ARAHY; Uncharacterized protein
STRING	GLYMA17G13580.1	1e-167	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4156	33	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	2e-93	C3H family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]