PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.171F6

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

WRKY

Protein Properties

Length: 202aa MW: 23289.5 Da PI: 8.4475

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.171F6	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.3	6.8e-33	123	181	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+ vv++tYeg H+h+ Aradu.171F6 123 LDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGVHTHP 181 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.1E-34	108	181	IPR003657	WRKY domain
SuperFamily	SSF118290	6.67E-30	115	182	IPR003657	WRKY domain
PROSITE profile	PS50811	29.895	118	183	IPR003657	WRKY domain
SMART	SM00774	1.5E-39	123	182	IPR003657	WRKY domain
Pfam	PF03106	8.0E-27	124	181	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000122	Biological Process	negative regulation of transcription from RNA polymerase II promoter
GO:0010055	Biological Process	atrichoblast differentiation
GO:0032107	Biological Process	regulation of response to nutrient levels
GO:0043620	Biological Process	regulation of DNA-templated transcription in response to stress
GO:0048527	Biological Process	lateral root development
GO:0005634	Cellular Component	nucleus
GO:0001046	Molecular Function	core promoter sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MDNNYSMLFP CPPSSSSTSS YQISISNNNN DNSNQQHGFI TGLNNNNNGQ SSNNSAFLDL 60 KFHEQQLKRS EEDQEEEEEE RINVSDHHQL GGGSSSSSNK KKGEKKIRKP RYAFQTRSQV 120 DILDDGYRWR KYGQKAVKNN KFPRSYYRCT HQGCNVKKQV QRLTKDEGVV VTTYEGVHTH 180 PIEKTTDNFE HILSQMQIYT PF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-27	113	180	7	74	Probable WRKY transcription factor 4
2lex_A	1e-27	113	180	7	74	Probable WRKY transcription factor 4
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00506	DAP	Transfer from AT5G13080	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.171F6

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT142124	9e-98	BT142124.1 Lotus japonicus clone JCVI-FLLj-20G12 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015971268.1	1e-151	probable WRKY transcription factor 75
Refseq	XP_020980780.1	1e-151	probable WRKY transcription factor 75
TrEMBL	A0A445CU02	1e-95	A0A445CU02_ARAHY; Uncharacterized protein
STRING	XP_007161664.1	3e-77	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1156	34	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13080.1	3e-58	WRKY DNA-binding protein 75