PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.17BB2
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HSF
Protein Properties Length: 177aa    MW: 20887.8 Da    PI: 10.0251
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.17BB2genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind64.42.6e-202811591
                  GTTTSEESSSS....SEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
  HSF_DNA-bind 15 lkeliswseng....nsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91
                  +++++sw ++g    +sfvv+ + efa+++Lp+yFkh+nf+SFvRQLn+Y    + ++  k k   + weF+++  +++++
   Aradu.17BB2  2 TDHIVSWGHDGhstsSSFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYHHFVLLKQGFK-KVVADRWEFANDDHHQHNH 81
                  689****9887777799*********************************75555544443.567999****999766554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.0E-16292IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.107.7E-22280IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.18E-16280IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.1E-17280IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-53143IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-54456IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MTDHIVSWGH DGHSTSSSFV VWRPPEFARD LLPNYFKHNN FSSFVRQLNT YHHFVLLKQG  60
FKKVVADRWE FANDDHHQHN HILAALSEDN QRLRRKNLML LSELTHMKNL YNDIIYFIQN  120
HLKPASSPFH HNQTTIPKLV ELDYSSPKGS RMMMMKLFGV PLSGKKRLHP DNIFQQD
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.17BB2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003617219.11e-67heat stress transcription factor B-4b
SwissprotQ7XHZ04e-30HFB4B_ORYSJ; Heat stress transcription factor B-4b
TrEMBLG7KCV73e-66G7KCV7_MEDTR; Heat shock transcription factor
STRINGAET001785e-67(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16123393
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.14e-31heat shock transcription factor B4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]