PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.18EWZ
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 146aa    MW: 16477.5 Da    PI: 7.272
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.18EWZgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding346.6e-111451148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+l++++k +G g          + R++k+c++rw +yl
      Aradu.18EWZ 14 KGAWTKEEDERLINYIKIHGEG----------LLRCGKSCRLRWINYL 51
                     79******************99..........689***********97 PP
2Myb_DNA-binding21.55.4e-075778122
                     TSSS-HHHHHHHHHHHHHTTTT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg 22
                     rg++T+eEdel+++++ +lG++
      Aradu.18EWZ 57 RGNFTEEEDELIINLHSLLGNN 78
                     89******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.6E-16554IPR009057Homeodomain-like
PROSITE profilePS5129416.316955IPR017930Myb domain
SMARTSM007172.8E-71353IPR001005SANT/Myb domain
PfamPF002491.2E-81451IPR001005SANT/Myb domain
SuperFamilySSF466891.48E-171579IPR009057Homeodomain-like
CDDcd001673.68E-81651No hitNo description
PROSITE profilePS500904.9135297IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.0E-105578IPR009057Homeodomain-like
SMARTSM007175.356115IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MGRSPCCEKE HTNKGAWTKE EDERLINYIK IHGEGLLRCG KSCRLRWINY LRPDLKRGNF  60
TEEEDELIIN LHSLLGNNTN IINDNNNNKF QLVSELVCED SSNSSSGFQS NNNKVCSCKG  120
AIVGGTAVTT TAADNSLYRF YRPMNI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-1513772699MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.18EWZ
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150355e-37AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015937713.12e-47myb-related protein 308
RefseqXP_024021415.18e-48myb-related protein 330
RefseqXP_025615910.12e-47myb-related protein 308
SwissprotQ9SZP12e-45MYB4_ARATH; Transcription repressor MYB4
TrEMBLA0A446R5103e-47A0A446R510_TRITD; Uncharacterized protein
TrEMBLB9RHN03e-46B9RHN0_RICCO; R2r3-myb transcription factor, putative
TrEMBLM8A6543e-47M8A654_TRIUA; Transcription repressor MYB4
STRINGXP_006466200.11e-46(Citrus sinensis)
STRINGXP_002513249.15e-47(Ricinus communis)
STRINGTRIUR3_28515-P15e-48(Triticum urartu)
STRINGXP_006426418.11e-46(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2870722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.19e-45myb domain protein 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Schenke D,Cai D,Scheel D
    Suppression of UV-B stress responses by flg22 is regulated at the chromatin level via histone modification.
    Plant Cell Environ., 2014. 37(7): p. 1716-21
    [PMID:24450952]
  3. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  4. Zhang J, et al.
    Soybean SPX1 is an important component of the response to phosphate deficiency for phosphorus homeostasis.
    Plant Sci., 2016. 248: p. 82-91
    [PMID:27181950]
  5. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  6. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]
  7. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]