PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.1A39F

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

C2H2

Protein Properties

Length: 546aa MW: 59134.6 Da PI: 8.8246

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.1A39F	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16	3.4e-05	102	124	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H Aradu.1A39F 102 FICEICNKGFQRDQNLQLHRRGH 124 89*******************88 PP
2	zf-C2H2	11.1	0.0013	178	200	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + Aradu.1A39F 178 WKCDKCSKKYAVQSDWKAHSKIC 200 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.05E-7	101	124	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.5E-5	101	124	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.845	102	124	IPR007087	Zinc finger, C2H2
Pfam	PF12171	6.6E-5	102	124	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.022	102	124	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	104	124	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	7.1E-4	166	199	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.05E-7	173	198	No hit	No description
SMART	SM00355	150	178	198	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 546 aa Download sequence Send to blast
MSNITSCDSG SFSTENTVPL LEDAVVKQQS SEILGGRFHH SPHSHTSTTT TNNNNNNTNA 60 SNTNSQPPPP PPKKKRNLPG NPDPSAEVIA LSPTTLMATN RFICEICNKG FQRDQNLQLH 120 RRGHNLPWKL KQRTSAEVRK RVYVYPESSC VHHNPARALG DLTGIKKHFC RKHGEKKWKC 180 DKCSKKYAVQ SDWKAHSKIC GTREYKCDCG TIFSRRDSFI THRAFCDALA EENNNKKNEG 240 SLFPNIPSNL QSQPQIPNLL LPSLPINTTP TTLSSSSSLP LHHDLIIPNP SFNNIPFPRN 300 PNTTTTTTTT TTSHPSLQLT STIFDDNALH LTASSSSLSS PHMSATALLQ KAAQMGATVS 360 SSNNNNNMVV ENSNKGGGYV TATTSMAPPS FSGVAPMQQN VNNNNNSLFM NQFMQQDMAT 420 TPHHYGNLMC GMNGVDMFNA ILDQSKALSK IIDHSNHHRE SAVAKRECTK GGSIGGNSDV 480 MTLDLLGIGG GGGGGHNGSG GFYGGGNNNN NQQQGDNNGA ASVRDEVWNW STKNAGFESF 540 SATSSI

Sequence ? help Back to Top

Protein Sequence Length: 546 aa Download sequence Send to blast

MSNITSCDSG SFSTENTVPL LEDAVVKQQS SEILGGRFHH SPHSHTSTTT TNNNNNNTNA  60
SNTNSQPPPP PPKKKRNLPG NPDPSAEVIA LSPTTLMATN RFICEICNKG FQRDQNLQLH  120
RRGHNLPWKL KQRTSAEVRK RVYVYPESSC VHHNPARALG DLTGIKKHFC RKHGEKKWKC  180
DKCSKKYAVQ SDWKAHSKIC GTREYKCDCG TIFSRRDSFI THRAFCDALA EENNNKKNEG  240
SLFPNIPSNL QSQPQIPNLL LPSLPINTTP TTLSSSSSLP LHHDLIIPNP SFNNIPFPRN  300
PNTTTTTTTT TTSHPSLQLT STIFDDNALH LTASSSSLSS PHMSATALLQ KAAQMGATVS  360
SSNNNNNMVV ENSNKGGGYV TATTSMAPPS FSGVAPMQQN VNNNNNSLFM NQFMQQDMAT  420
TPHHYGNLMC GMNGVDMFNA ILDQSKALSK IIDHSNHHRE SAVAKRECTK GGSIGGNSDV  480
MTLDLLGIGG GGGGGHNGSG GFYGGGNNNN NQQQGDNNGA ASVRDEVWNW STKNAGFESF  540
SATSSI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-32	174	232	3	61	Zinc finger protein JACKDAW
5b3h_F	1e-32	174	232	3	61	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.1A39F

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015939804.1	0.0	protein indeterminate-domain 2-like
Swissprot	Q9SCQ6	1e-114	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	A0A445BKJ5	0.0	A0A445BKJ5_ARAHY; Uncharacterized protein
STRING	XP_007144938.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2192	30	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	2e-96	C2H2 family protein

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]