PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.1AC2T
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family CPP
Protein Properties Length: 707aa    MW: 77170.1 Da    PI: 6.6039
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.1AC2TgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.93.1e-16455493240
          TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                  ++k+CnCkkskClk+YCeCfaag++C e C+C+dC+Nk 
  Aradu.1AC2T 455 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKP 493
                  689**********************************96 PP
2TCR50.73.5e-16540578139
          TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                  ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN 
  Aradu.1AC2T 540 RHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNA 578
                  589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.5E-18454495IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.706455580IPR005172CRC domain
PfamPF036389.5E-12457492IPR005172CRC domain
SMARTSM011144.4E-17540581IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.1E-11542578IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MDTPDRATTT NNLNPPKFED SPVFNFLNSL SPIKPVKSVH ITQTFSSISF SSPPSVFTSP  60
HVNSNKESRF LRRHNLLDTS KPKVTSEDEN QTGSAEQALT DSTHAHNNSR ELEKNADKGT  120
SIGDASIEPA SEQAKFSIEL PQTLKYESGS PGYDPILCGD EANTLLSLPS SEAAQDVACS  180
HESSKKNLVE GELHLHGICQ TEPKIDGTEC DWDNLINNAS DMLIFSSPNV SEAFKDLMNK  240
QLDPSGRIMQ IVNQVASGSG HENEDHPPKP GLASDTQYTQ ENIANVALVA SNPCEKMDDE  300
HVYVIHRGIR RRCLDFEMAS VRRNNSDGNS NASSNATKSD ERNTGGDSRR CFLPGIGLHL  360
NALATLKEHR GMKNEKSSSG RQLNIPSSTS SLLPQEHHLL LLPASSERDM ELPENEVQPV  420
DDCSQSLSLM AGEEFNQNSP KKKRRKVETA GESESCKRCN CKKSKCLKLY CECFAAGVYC  480
IEPCSCQDCF NKPVHEDTVL QTRKQIESRN PLAFAPKVIR SSDSVSEIAD DPNKTPASAR  540
HKRGCNCKKS SCLKKYCECY QGGVGCSISC RCEGCKNAFG RKDGSAGIDA EAEEETEASE  600
KGEGKPPRSF IATISGSALI ASQKLGKPNI LRPQVKLEKP HQTVADDEMM DIIQGDSSPI  660
ACIKTSSPNG KRISSPNCEL GSSPTRRGGR KLILHSIPSF PSLTHHH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A8e-1845757712120Protein lin-54 homolog
5fd3_B8e-1845757712120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1440444KKKRR
2440445KKKRRK
3441445KKRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.1AC2T
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB3786451e-163AB378645.1 Lotus japonicus CPP-L56 mRNA for transcription factor CPP, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015941548.10.0protein tesmin/TSO1-like CXC 2 isoform X3
TrEMBLA0A445BFP90.0A0A445BFP9_ARAHY; Uncharacterized protein
STRINGGLYMA01G44670.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26193375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-104TESMIN/TSO1-like CXC 2