PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.1I5W4
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 461aa    MW: 52747.5 Da    PI: 8.5076
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.1I5W4genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR186.83.2e-2730115291
         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                  fY+eYAk++GF + k +s++s+ ++e+++++f C ++g++++++++     ++r++ ++gCka+++vk+++dgkw+v+++e++HnHel p
  Aradu.1I5W4  30 FYKEYAKSAGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRRQDGKWYVYRFEKDHNHELLP 115
                  9***************************************999877....9************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.6E-2530115IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.695254290IPR007527Zinc finger, SWIM-type
PfamPF044342.8E-9260288IPR007527Zinc finger, SWIM-type
SMARTSM005752.3E-8265292IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MTDTSVFMGT AILEPRNDME FESHEAAYAF YKEYAKSAGF GTAKLSSRRS RASKEFIDAK  60
FSCIRYGNKQ QSDDAINPRP SPKIGCKASM HVKRRQDGKW YVYRFEKDHN HELLPAQAHF  120
FRSHRSSDPL SNDVRMRRRK NSTTVSKLFS AYQNVDCLEN FMKNQHDRGR KQYRVILGDR  180
HEEEAKANFD AWHETPELRS PSPFEKQMLL VYTHEIYKRF QVEVLGAAAC HLKRENTGVT  240
ETYSVKDFEN NESYMVEWNT SNSDICCSCR SFEYKGYLCR HAIVVLQMSG VFSIPSKYIL  300
QRWTNAALSR HPIGEKLEEV QVKVRRFNDL CRRAIILGEE GSLSQESYYL ALGAISEALK  360
QCANLSNPVE NETRADASAT HVVCNDEEYQ SIISSNNITP VPKINTSNKV ARTLAACRNL  420
GSTENGERNK EKVSQLEAAC VKDGFQQVVC YVLTFAFAIR V
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.1I5W4
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025613823.10.0protein FAR1-RELATED SEQUENCE 4
RefseqXP_025613824.10.0protein FAR1-RELATED SEQUENCE 4
SwissprotQ6NQJ79e-99FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBLA0A2H5NMJ70.0A0A2H5NMJ7_CITUN; Uncharacterized protein
STRINGGLYMA15G03750.11e-157(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76320.11e-101FAR1-related sequence 4
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]