PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.1JQ3A

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

bZIP

Protein Properties

Length: 485aa MW: 54246 Da PI: 6.8608

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.1JQ3A	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.8	6.1e-10	197	237	3	40
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLea 40 + k rr+++NReAAr+sR+RKka++++Le+ + ++Le+ Aradu.1JQ3A 197 DQKTLRRLAQNREAARKSRLRKKAYVQQLENsrvRLAQLEQ 237 56889*************************83334444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.3E-7	190	241	No hit	No description
SMART	SM00338	4.4E-5	195	259	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.335	197	241	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	5.9E-7	198	238	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.17E-6	199	242	No hit	No description
CDD	cd14708	1.24E-22	199	251	No hit	No description
PROSITE pattern	PS00036	0	202	217	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.8E-30	284	358	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence Send to blast
MQRFKSTTES PPSLYSHSLF HLRGDDTTTT PNPTTRLTDS DLAVALVFQQ QHYHHAFDLT 60 SSYSLSHFLI SHSLIYQAYL ILCIILLLFS ASPPFTAKFN NVAVASSNLQ YGTFNTNLAS 120 SGCYVETGQQ QQQQHMFQQK GHFETRSESA MADNSQQTDD ASTDIDTDDK THCNNRAGNG 180 ELVVVDSSDQ TKLKHEDQKT LRRLAQNREA ARKSRLRKKA YVQQLENSRV RLAQLEQELQ 240 RARQQGVFAA TGTVGDHARA VVGNGALAFD MDYARWVDEH QRLISDLRSA VNSQMGDNEL 300 NLLVDGVLAH HDELFRLKTI GAKADVFHIL SGTWKTPAER CFMWLGGFRP SELLKIVRNH 360 LEPLTDEQLM GIYNLQQSSQ QAEDALSQGM EALHQSLSET LSSTSLGPTS SGNVAQYMGL 420 MAIAMGKLAT LENFLHQADL LRQQALQQLQ RILATHQAAR ALLVINDYIS RLRALSSLWL 480 ACPKE

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence Send to blast

MQRFKSTTES PPSLYSHSLF HLRGDDTTTT PNPTTRLTDS DLAVALVFQQ QHYHHAFDLT  60
SSYSLSHFLI SHSLIYQAYL ILCIILLLFS ASPPFTAKFN NVAVASSNLQ YGTFNTNLAS  120
SGCYVETGQQ QQQQHMFQQK GHFETRSESA MADNSQQTDD ASTDIDTDDK THCNNRAGNG  180
ELVVVDSSDQ TKLKHEDQKT LRRLAQNREA ARKSRLRKKA YVQQLENSRV RLAQLEQELQ  240
RARQQGVFAA TGTVGDHARA VVGNGALAFD MDYARWVDEH QRLISDLRSA VNSQMGDNEL  300
NLLVDGVLAH HDELFRLKTI GAKADVFHIL SGTWKTPAER CFMWLGGFRP SELLKIVRNH  360
LEPLTDEQLM GIYNLQQSSQ QAEDALSQGM EALHQSLSET LSSTSLGPTS SGNVAQYMGL  420
MAIAMGKLAT LENFLHQADL LRQQALQQLQ RILATHQAAR ALLVINDYIS RLRALSSLWL  480
ACPKE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269\|PubMed:19395638, ECO:0000269\|PubMed:19395639, ECO:0000269\|PubMed:9990857}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.1JQ3A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015941794.1	0.0	transcription factor TGA2.3 isoform X1
Refseq	XP_025620696.1	0.0	transcription factor TGA2.3
Swissprot	Q9SX27	1e-155	PAN_ARATH; Transcription factor PERIANTHIA
TrEMBL	A0A445BEF5	0.0	A0A445BEF5_ARAHY; Uncharacterized protein
STRING	XP_007142889.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6022	31	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68640.1	1e-116	bZIP family protein

Publications ? help Back to Top
Maier AT,Stehling-Sun S,Offenburger SL,Lohmann JU The bZIP Transcription Factor PERIANTHIA: A Multifunctional Hub for Meristem Control. Front Plant Sci, 2011. 2: p. 79 [PMID:22645551] Chandler JW,Werr W Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation. J. Exp. Bot., 2014. 65(12): p. 3097-110 [PMID:24744428] Wynn AN,Seaman AA,Jones AL,Franks RG Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development. Front Plant Sci, 2014. 5: p. 130 [PMID:24778638] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] de Luis Balaguer MA, et al. Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(36): p. E7632-E7640 [PMID:28827319]