PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.1LA8W

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

Dof

Protein Properties

Length: 199aa MW: 20439.8 Da PI: 8.0529

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.1LA8W	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	114.8	3.6e-36	26	78	2	54
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGgg 54 ++++l+cprCdstntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvG+ Aradu.1LA8W 26 EQEHLPCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGAP 78 57899**********************************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-23	4	76	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.5E-30	28	77	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.055	30	84	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	32	68	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009733	Biological Process	response to auxin
GO:0009751	Biological Process	response to salicylic acid
GO:0042545	Biological Process	cell wall modification
GO:0045787	Biological Process	positive regulation of cell cycle
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MPSSDSGESR RSAKPHNTSL APPPAEQEHL PCPRCDSTNT KFCYYNNYNL SQPRHFCKNC 60 RRYWTKGGVL RNVPVGAPRF GGVVVDGEAK GNNVSLCGGS FTSLLSNTQQ GPGGFLALGG 120 FGLGLGPGLE DVGFGMGMGR GGWAFPGVVA DGGSIGGGVA GSGVGHTWQF EGGDQGGFVS 180 GDCFPWPGLA ISTPGNGLK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00402	DAP	Transfer from AT3G50410	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.1LA8W

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin and salicylic acid (SA). {ECO:0000269\|PubMed:10758484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ857254	1e-50	DQ857254.1 Glycine max Dof4 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015963941.2	1e-100	LOW QUALITY PROTEIN: dof zinc finger protein DOF3.4-like
Swissprot	Q39088	2e-47	DOF34_ARATH; Dof zinc finger protein DOF3.4
TrEMBL	A0A444ZA34	8e-94	A0A444ZA34_ARAHY; Uncharacterized protein
STRING	GLYMA02G06970.2	2e-73	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2801	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50410.1	2e-38	OBF binding protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]