PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.1V6B6

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

Nin-like

Protein Properties

Length: 202aa MW: 23804.1 Da PI: 5.0782

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.1V6B6	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	80	2.4e-25	91	141	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++e++ ++++k+F+lpi++AA++++++lT+LKr+CR++ IkRWPhRkiksl Aradu.1V6B6 91 KSELEYDEIKKHFHLPITEAASKMNIGLTLLKRRCRELSIKRWPHRKIKSL 141 67899********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.37	83	163	IPR003035	RWP-RK domain
Pfam	PF02042	8.5E-22	94	141	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MEFFNNELDS FSNDIDKIMG ISPMDDFDDW APLLTYKSTQ KLFLTDLPEV DNDFDDLPPL 60 DDFKKESEEE DQEHKQLLQL VPSSSTIKNK KSELEYDEIK KHFHLPITEA ASKMNIGLTL 120 LKRRCRELSI KRWPHRKIKS LHLLIQTLKE TGLDNEVEML EEEINMLKQV PETEITQETK 180 KLRQAYFKAN YKRRKLLASN SS

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.1V6B6

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015934310.1	1e-146	protein RKD4 isoform X1
Swissprot	Q9LVU8	9e-35	RKD4_ARATH; Protein RKD4
TrEMBL	A0A445BSK7	1e-144	A0A445BSK7_ARAHY; Uncharacterized protein
STRING	AES72521	1e-50	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6898	32	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	3e-37	RWP-RK domain-containing protein

Publications ? help Back to Top
Azpeitia E,Davila-Velderrain J,Villarreal C,Alvarez-Buylla ER Gene regulatory network models for floral organ determination. Methods Mol. Biol., 2014. 1110: p. 441-69 [PMID:24395275]