PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.1Y370
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GRAS
Protein Properties Length: 426aa    MW: 48803.2 Da    PI: 4.7025
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.1Y370genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS241.82.9e-74224252374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  ++lL ecA+a++++d +++q+lL+ l+elasp+gd+ q+la+yf++AL  + ++++++ y  l++ ++++++ +++ ++   f+evsP+ +f+h++ N
  Aradu.1Y370  22 TKLLRECARAINDRDSSKIQHLLWMLNELASPYGDSQQKLASYFLQALFCKATQTGQRFYMNLKSASEKNQSFDSARKMILKFQEVSPWTTFGHVASN 119
                  57999*******************************************************8887777765554444445455**************** PP

         GRAS 100 qaIleavege.......ervHiiDfdisq...GlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl.va 183
                   aIlea+ ++       +++HiiD++ +    ++QWp++l++La+++    ++p+l++T v  +es +   ++e+ +r++kfA+ ++vpfe+n++  +
  Aradu.1Y370 120 GAILEAFLEAggeknkkKKLHIIDISNNTstlCTQWPTFLESLATKSsdhVETPQLKLTIVLVKESLKGSVMNEICQRMEKFARLMRVPFEINMInGV 217
                  ******96555556667899*****965433399************9666679**********9999***************************9656 PP

         GRAS 184 krledleleeLrvkp...........gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse.........sFlerfleal 261
                  ++l +++ eeL +             +  +aVn+v  l r+       e erd+v+ ++kslsP++v+ ve+e+  ++          +F++ f e+l
  Aradu.1Y370 218 EHLWKVTKEELGIVVeeeddddddddDAFIAVNCVGGLRRVE------EGERDNVIGMLKSLSPRIVTTVEEESGGSDDscitrndddDFVKCFEECL 309
                  79999999**9765545667777775667************7......567889*******************777444477777778********** PP

         GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegae..rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...ee 354
                   +y   f++le+++p+ s+e+ ++Ere  +r+i   + c++++    +++e+  +W++r++e  F+p+ l++++++++++ll++++  g+++    ++
  Aradu.1Y370 310 WFYKIYFEMLEESFPTISNEKLMLERE-CSRNILGDLGCNNDNnsDHNKRERGVEWSMRFREY-FTPIGLNDDVVDDVRALLKRYNRSGWSLMlpsSK 405
                  ***************************.799999999999888333455677789*****998.*************************988876566 PP

         GRAS 355 sgslvlgWkdrpLvsvSaWr 374
                   + ++l W+d+p++++SaW+
  Aradu.1Y370 406 VEGIYLKWRDQPVLWASAWK 425
                  78888**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.8171402IPR005202Transcription factor GRAS
PfamPF035141.0E-7122425IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MMTSSSLNSD DPCFDGDGKW ATKLLRECAR AINDRDSSKI QHLLWMLNEL ASPYGDSQQK  60
LASYFLQALF CKATQTGQRF YMNLKSASEK NQSFDSARKM ILKFQEVSPW TTFGHVASNG  120
AILEAFLEAG GEKNKKKKLH IIDISNNTST LCTQWPTFLE SLATKSSDHV ETPQLKLTIV  180
LVKESLKGSV MNEICQRMEK FARLMRVPFE INMINGVEHL WKVTKEELGI VVEEEDDDDD  240
DDDDAFIAVN CVGGLRRVEE GERDNVIGML KSLSPRIVTT VEEESGGSDD SCITRNDDDD  300
FVKCFEECLW FYKIYFEMLE ESFPTISNEK LMLERECSRN ILGDLGCNND NNSDHNKRER  360
GVEWSMRFRE YFTPIGLNDD VVDDVRALLK RYNRSGWSLM LPSSKVEGIY LKWRDQPVLW  420
ASAWKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-121642670474Protein SHORT-ROOT
5b3h_B1e-122642616420Protein SHORT-ROOT
5b3h_E1e-122642616420Protein SHORT-ROOT
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.1Y370
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015952511.20.0protein SHORT-ROOT-like
TrEMBLA0A445E3U30.0A0A445E3U3_ARAHY; Uncharacterized protein
STRINGEOY048021e-172(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129734106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-122GRAS family protein