PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.20INS
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 279aa    MW: 32041.1 Da    PI: 4.8763
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.20INSgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.74.3e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+ eEd++l+  v+++G  +W+  ++  g+ R++k+c++rw++yl
      Aradu.20INS 14 KGAWSREEDQRLIAFVQRYGHSNWRQLPKFAGLARCGKSCRLRWLNYL 61
                     79********************************************97 PP
2Myb_DNA-binding61.41.9e-1968112248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      g+ T+eE+el++++++qlG++ W++Ia++++ gRt++++k++w+++l
      Aradu.20INS  68 GNYTQEEEELIIKLHQQLGNR-WSLIAERLP-GRTDNEIKNHWHSHL 112
                      789******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.914961IPR017930Myb domain
SuperFamilySSF466895.19E-3111108IPR009057Homeodomain-like
SMARTSM007171.9E-121363IPR001005SANT/Myb domain
PfamPF002496.7E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-221568IPR009057Homeodomain-like
CDDcd001671.93E-101661No hitNo description
PROSITE profilePS5129427.65962116IPR017930Myb domain
SMARTSM007173.3E-1866114IPR001005SANT/Myb domain
PfamPF002492.2E-1768112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-2669114IPR009057Homeodomain-like
CDDcd001677.73E-1469112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MVRAPFYDKY GVKKGAWSRE EDQRLIAFVQ RYGHSNWRQL PKFAGLARCG KSCRLRWLNY  60
LRPNLKHGNY TQEEEELIIK LHQQLGNRWS LIAERLPGRT DNEIKNHWHS HLKKLSSKNN  120
NNEINPSSES ESESKSNNPI DDDILEGKHT NQPKDSVSPS YDYVDSANNN KFQHRVLESS  180
SSTETSSYTD DEVGHSYYSL TPNNVEQSTI MNNSPTSSED YCVVPSVSFE EFGGDFWTEP  240
FIVANNDAYA NDEIIISGED DVGFLVPYLY ESADFCFNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A9e-30141144103MYB PROTO-ONCOGENE PROTEIN
1h88_C4e-29141356157MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-29141356157MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-29141144103C-Myb DNA-Binding Domain
1msf_C1e-29141144103C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.20INS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150397e-50AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015953561.10.0transcription factor MYB14-like
TrEMBLA0A445E0S60.0A0A445E0S6_ARAHY; Uncharacterized protein
STRINGXP_007132613.11e-76(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.12e-52myb domain protein 15