PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.2376Y
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GRAS
Protein Properties Length: 454aa    MW: 49803.4 Da    PI: 5.9126
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.2376YgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS383.52.6e-117864453374
         GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                   lLl+cAe+v+ ++l  a+ lL ++ el+sp g++ +R+ ayf++AL+ar+++s+ + y+ l++++ + ++s++ ++a++ ++ vsP++kfsh+taNq
  Aradu.2376Y  86 GLLLQCAECVAMDNLDFANDLLPEIAELSSPFGTSPERVGAYFAQALQARVVSSCLGAYSPLTAKSVTLTQSQRIFNAFQSYNSVSPLVKFSHFTANQ 183
                  58******************************************************************99**************************** PP

         GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                  aI +a++ge+rvHiiD+di+qGlQWp L++ LasR+++  s+RiTg+gs    s+e le+tg+rLa+fA++lg+pfef+++  k  +  +l++L v+p
  Aradu.2376Y 184 AIFQALDGEDRVHIIDLDIMQGLQWPGLFHILASRSRKIRSMRITGFGS----SSELLESTGRRLADFASSLGLPFEFHPVEGKIGSITDLSQLGVRP 277
                  *************************************************....9**************************878888888********* PP

         GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                  +Ea++V++++  h l+d ++s       +L+l+ +l+Pk+++ veq+++h ++sFl+rf+eal+yysalfd+l  +l+++s er++vE++llg ei+n
  Aradu.2376Y 278 NEAIVVHWMH--HCLYDITGSDLG----TLRLLSQLRPKLITTVEQDLSH-AGSFLARFVEALHYYSALFDALGDGLGADSLERHTVEQQLLGCEIRN 368
                  ********99..777777777777....**********************.899******************************************** PP

         GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +va  g +r+ + + +e+W e l+++GF+pv+l+ + a+qa+lll +++++gy++ ee+gsl lgWkd +L+++SaW+
  Aradu.2376Y 369 IVAVGGPKRTGEVK-VERWGEELRRVGFRPVSLRGNPASQASLLLGMFPWRGYTLVEENGSLKLGWKDLSLLTASAWQ 445
                  ********998887.9*************************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.61558425IPR005202Transcription factor GRAS
PfamPF035148.9E-11586445IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MLQSLVPRSP ITPNPNSMKT KRDRHDATAD SPTDEEPSFK RANFSGEKSS AQAVGEAEGH  60
HEEQQQQVLE VAEARGGEST GLKLLGLLLQ CAECVAMDNL DFANDLLPEI AELSSPFGTS  120
PERVGAYFAQ ALQARVVSSC LGAYSPLTAK SVTLTQSQRI FNAFQSYNSV SPLVKFSHFT  180
ANQAIFQALD GEDRVHIIDL DIMQGLQWPG LFHILASRSR KIRSMRITGF GSSSELLEST  240
GRRLADFASS LGLPFEFHPV EGKIGSITDL SQLGVRPNEA IVVHWMHHCL YDITGSDLGT  300
LRLLSQLRPK LITTVEQDLS HAGSFLARFV EALHYYSALF DALGDGLGAD SLERHTVEQQ  360
LLGCEIRNIV AVGGPKRTGE VKVERWGEEL RRVGFRPVSL RGNPASQASL LLGMFPWRGY  420
TLVEENGSLK LGWKDLSLLT ASAWQPSDLV TYPD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-1659044625380Protein SCARECROW
5b3h_A1e-1659044624379Protein SCARECROW
5b3h_D1e-1659044624379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.2376Y
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015952735.10.0scarecrow-like protein 23
RefseqXP_025686836.10.0scarecrow-like protein 23
SwissprotQ9FHZ10.0SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A445E2L40.0A0A445E2L4_ARAHY; Uncharacterized protein
STRINGXP_004505671.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.10.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]