PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.262YC

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

LBD

Protein Properties

Length: 254aa MW: 28453.8 Da PI: 8.3106

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.262YC	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	145	2.2e-45	13	112	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+Ca+dCv+apyfpa++p+kfanvhk+FGasnv k+l++lpe++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+ +la+++ Aradu.262YC 13 PCAACKLLRRRCAADCVFAPYFPADEPHKFANVHKVFGASNVNKMLQELPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDALQIQLAVAQ 110 7**********************************************************************************************998 PP DUF260 99 ee 100 +e Aradu.262YC 111 AE 112 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.644	12	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.9E-45	13	110	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MKEGGRKQGS ASPCAACKLL RRRCAADCVF APYFPADEPH KFANVHKVFG ASNVNKMLQE 60 LPEHQRGDAV SSMVYEANAR VRDPVYGCVG AISSLQQQID ALQIQLAVAQ AEAVHLRVRQ 120 TQTASCSYWT QPHSPTNSAS PSSKPIFDID MGLDHTSYAD SILLWLNADM IKLNKNRTLE 180 ALVVIEGAAV EIFRPLDYFW FAKRGEAALM VGLWTYFFDY GKRCCNGALY VVLKYCYDLL 240 NIWKMNLLAL LRFS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-48	9	112	7	110	LOB family transfactor Ramosa2.1
5ly0_B	1e-48	9	112	7	110	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.262YC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015960093.1	1e-117	LOB domain-containing protein 4-like isoform X2
Refseq	XP_025694992.1	1e-117	LOB domain-containing protein 4 isoform X2
TrEMBL	A0A444ZHX3	1e-109	A0A444ZHX3_ARAHY; Uncharacterized protein
STRING	GLYMA20G02850.1	1e-90	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1334	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	2e-48	LOB domain-containing protein 4