PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.2DN0K

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

C2H2

Protein Properties

Length: 212aa MW: 24350.9 Da PI: 9.5374

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.2DN0K	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22.3	3.4e-07	76	95	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C+k+F+r nL+ H+ Aradu.2DN0K 76 FSCPVCPKTFNRYNNLQMHM 95 89*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.11E-6	71	99	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.1E-5	76	95	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.866	76	103	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	78	98	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MNQKQLEPLP LLSSFLGSST CSSSELNQNL KEDVTVALHI GLPDNSHDNQ NVEPLQAPNN 60 YWIPTEEQII IGFSHFSCPV CPKTFNRYNN LQMHMWGHGS EYRRGPESLK RTHPRPLLEI 120 ACYCCKGGCK NNIEHPRAKP LKDFRTLQTH YKRKHGPKPF SCRKCAKNLA VKGDWRTHEK 180 NCGKRWLCLC GSDFKHKRSL KDHIKAFGFG HT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	106	111	ESLKRT

Functional Description ? help Back to Top
Source	Description
UniProt	May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269\|PubMed:11782451, ECO:0000269\|PubMed:21477081}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.2DN0K

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015957769.2	1e-159	protein TRANSPARENT TESTA 1-like
Refseq	XP_025691611.1	1e-159	protein TRANSPARENT TESTA 1
Swissprot	Q8VWG3	1e-92	TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBL	A0A444ZS66	1e-158	A0A444ZS66_ARAHY; Uncharacterized protein
STRING	XP_007141186.1	1e-124	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF170	34	289

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34790.1	7e-94	C2H2 family protein

Publications ? help Back to Top
Lian J, et al. Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus. Plant Sci., 2017. 254: p. 32-47 [PMID:27964783]