PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.2KH9E

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 671aa MW: 76188.8 Da PI: 9.8274

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.2KH9E	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	60.1	7.1e-19	218	309	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 +fY++ + GF vrk s k g+ ++++f C+keg r+ ++++ +++r +++etrt+C+akl + +k + w+v k+ +eHnH+l+p Aradu.2KH9E 218 EFYRRLGMCHGFGVRKGDSGKD-CRGNLIRYRFFCNKEGLRDGRHNDrVDRRRAHKPETRTNCEAKLSIYFDKiERCWKVRKVATEHNHDLTP 309 69***************999.6666***********999994556667999************9**************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.9E-17	218	309	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.446	403	441	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.5E-4	414	433	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0072	416	443	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 671 aa Download sequence Send to blast
MQKKKSWQSH GMSMSLTTMI ESSAADAVSP NVFPLLPCTS DAKSNWNHAK TLALASFALI 60 MAAGRPSMFA YAISLRLRSR SPPSSPHLAL TFRVHLPFIL RFLVRVPPEA TSVCSKRRGE 120 DLALYLAGEL ILYRLCKDTL NYLFKRTFEI AEXXXXXXXX XXXXXXXXXX XXXXXXNPED 180 MGGQDVADEF LGEYEDVATL DVDDIKRMRW DSVDAAYEFY RRLGMCHGFG VRKGDSGKDC 240 RGNLIRYRFF CNKEGLRDGR HNDRVDRRRA HKPETRTNCE AKLSIYFDKI ERCWKVRKVA 300 TEHNHDLTPA SMVHLIANHQ FGIGGPGVPK QRLLLHFNSM NSVPVMTTGL TSIEQHAASV 360 YMREVFTDVK KQIVQAAALI LISKKRCLNT MVYMVEEYEQ PATRIKVAYG RSTGKIDCQC 420 NFWRKNGYPC RHMFFVMKSE HVTTIPDALV LQRWRLNAKA IESYVERWGG TSEAGFLLRH 480 GALHTASHRL FLIGAQKLSL FRKALNGVLT LCRELELEYR AFEDGGGERP ISAVQTKEVN 540 CVVRDPAVAK PKGAQKFTKK GHLRKKRLCT ICKRPGHTKR HCMKNIEQQR DCSEEELVED 600 NGIHQGLNSG SKRRKLVLPV GKSMSHPVES CAGDEDSPAR IIGNEPQVLH QMQQFLREAR 660 QNHGLTTGSD K

Sequence ? help Back to Top

Protein Sequence Length: 671 aa Download sequence Send to blast

MQKKKSWQSH GMSMSLTTMI ESSAADAVSP NVFPLLPCTS DAKSNWNHAK TLALASFALI  60
MAAGRPSMFA YAISLRLRSR SPPSSPHLAL TFRVHLPFIL RFLVRVPPEA TSVCSKRRGE  120
DLALYLAGEL ILYRLCKDTL NYLFKRTFEI AEXXXXXXXX XXXXXXXXXX XXXXXXNPED  180
MGGQDVADEF LGEYEDVATL DVDDIKRMRW DSVDAAYEFY RRLGMCHGFG VRKGDSGKDC  240
RGNLIRYRFF CNKEGLRDGR HNDRVDRRRA HKPETRTNCE AKLSIYFDKI ERCWKVRKVA  300
TEHNHDLTPA SMVHLIANHQ FGIGGPGVPK QRLLLHFNSM NSVPVMTTGL TSIEQHAASV  360
YMREVFTDVK KQIVQAAALI LISKKRCLNT MVYMVEEYEQ PATRIKVAYG RSTGKIDCQC  420
NFWRKNGYPC RHMFFVMKSE HVTTIPDALV LQRWRLNAKA IESYVERWGG TSEAGFLLRH  480
GALHTASHRL FLIGAQKLSL FRKALNGVLT LCRELELEYR AFEDGGGERP ISAVQTKEVN  540
CVVRDPAVAK PKGAQKFTKK GHLRKKRLCT ICKRPGHTKR HCMKNIEQQR DCSEEELVED  600
NGIHQGLNSG SKRRKLVLPV GKSMSHPVES CAGDEDSPAR IIGNEPQVLH QMQQFLREAR  660
QNHGLTTGSD K

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.2KH9E

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A445BJ40	1e-167	A0A445BJ40_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14020	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-11	FAR1-related sequence 5