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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Aradu.2V49U |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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| Family |
C2H2 |
| Protein Properties |
Length: 406aa MW: 44022.7 Da PI: 8.8188 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Aradu.2V49U | genome | NCGR_PGC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 16.5 | 2.3e-05 | 48 | 70 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C++C+k F r nL+ H r H
Aradu.2V49U 48 FICEICNKGFQRDQNLQLHRRGH 70
89*******************88 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 406 aa
Download sequence Send
to blast |
MMNPNPNNKG SEEGGVIQKK KRNHPGTPDP EAEVIALSPK TLMATNRFIC EICNKGFQRD 60
QNLQLHRRGH NLPWKLRQRS NKGSKKYAVQ SDWKAHSKTC GTREYKCDCG TLFSRKDSFI 120
THRAFCDALA LETSSLLLPP STTNLNFHTQ QPPPPPSHAL IPPLHFNHSP NLSLWLNHHQ 180
QHATSSHDNN SNLVGLYHHN ASSSLPLPDI VQMNNFTHNS NSANHLSLSS SSLPAIGKSS 240
DNLASIYTSD GQSTTTDNNN NQLSPMSATA LLQKAAQMGS TRSTTTPSIF SATFGVMTSS 300
SSNNSNHAHA GDFASTSSFT SFTHSSNTYD QLVMQTAAQN STTDPAGNLK LPHHAGSNSA 360
SMEHNLTRDF LGVSGAGEGP AGLHQFLPQE LAKFASSMGL TQFTTN
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}. |
