PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.2X4SQ
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 496aa    MW: 53915.7 Da    PI: 8.2576
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.2X4SQgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.57.1e-11151175226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  +++ C +++ t tCk+Gd+CkF H+
  Aradu.2X4SQ 151 GEKDCAHYMLTRTCKFGDSCKFDHP 175
                  7889********************8 PP
2zf-CCCH30.94.6e-10204228327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  ++ C++f +t  Ck+G++CkF+H++
  Aradu.2X4SQ 204 EPDCPYFIKTQRCKFGSKCKFNHPR 228
                  789********************96 PP
3zf-CCCH361.2e-11244268327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  ++lC f+ +tG Ck+G++CkF+H++
  Aradu.2X4SQ 244 EPLCAFYVKTGRCKFGATCKFHHPK 268
                  79*********************96 PP
4zf-CCCH40.16.1e-13318341326
                  S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                  ++ C+f+++tG CkyG++C+++H+
  Aradu.2X4SQ 318 EVDCPFYMKTGSCKYGATCRYNHP 341
                  789********************9 PP
5zf-CCCH41.71.9e-13404427326
                  S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                  + +C+f+++tG+Ck+G+rCkF+H+
  Aradu.2X4SQ 404 QIECDFYMKTGECKFGERCKFHHP 427
                  568********************9 PP
6zf-CCCH43.26.7e-14449473327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                   ++C+++++tGtCk+G++CkF H+p
  Aradu.2X4SQ 449 VSICPYYMKTGTCKFGATCKFDHPP 473
                  689********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0011149176IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.507149177IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-5150176IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-8151175IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-4155174IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-4201228IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.061201229IPR000571Zinc finger, CCCH-type
PfamPF006429.6E-7204228IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5206229IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-4207228IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-6241268IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.741241269IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-6244269IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-9244268IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-5246267IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-6315342IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.906315343IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-10318341IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5318342IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4321340IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-7401428IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.507401429IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-6402429IPR000571Zinc finger, CCCH-type
PfamPF006428.1E-11405427IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-5407427IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-7446473IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.854446474IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-11448473IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-6449473IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-6450471IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MLKNGKSKSH VHTYSPTNYR VPNAMFLSHR RDAALRFTSS AATTATDADI GPPGVVSRVS  60
SVTAGPNSSS ASHLLQASSW PAAIAAAAAA ANGGSPALEL KRSSESLYYP TILGIPNTVG  120
QSEAWYSTNS LAKRPRYESG SNLPIYPQRP GEKDCAHYML TRTCKFGDSC KFDHPIWVPD  180
GGIPDWKEIS NTVSSETLPE RIGEPDCPYF IKTQRCKFGS KCKFNHPRSS ENGDISALPE  240
RPSEPLCAFY VKTGRCKFGA TCKFHHPKDI QILTSDELSY NAEQTQENSV REGATGDTQS  300
FLSPLLHNSK GLPVRMGEVD CPFYMKTGSC KYGATCRYNH PDRNAIYPSV AAFGSSMVTS  360
MAANLSIGSI NPSVPIYQAY DPRLSNPMSQ LGVAEIMYPQ RPGQIECDFY MKTGECKFGE  420
RCKFHHPLDR SATSSIKLTP AGLPRREGVS ICPYYMKTGT CKFGATCKFD HPPPGEVIEI  480
AKSQGTSATD GGEADS
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.2X4SQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150396e-67AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015936930.10.0zinc finger CCCH domain-containing protein 37 isoform X1
RefseqXP_025615097.10.0zinc finger CCCH domain-containing protein 37 isoform X1
SwissprotQ941Q30.0C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A445BZ940.0A0A445BZ94_ARAHY; Uncharacterized protein
STRINGXP_007133464.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75583345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-180floral homeotic protein (HUA1)