PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.2Z7A8
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 530aa    MW: 61127.9 Da    PI: 9.9478
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.2Z7A8genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR151.63.1e-1644130191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++Y k vGFs+r+++++k+   +ei+++  +Cs+egk + + +    +++t+++  ++C a++  +  k  g w ++k++l+H+H+++p
  Aradu.2Z7A8  44 KFYKDYVKAVGFSTRVQSTNKK--GNEIKNQLITCSREGKWKFKISP---TEKTNPTASVNCPARIYTHTLKdVGSWIISKVVLHHSHPCCP 130
                  6****************98887..8889*************998877...8999************99887779***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-1344130IPR004330FAR1 DNA binding domain
PROSITE profilePS509668.877305341IPR007527Zinc finger, SWIM-type
SMARTSM005750.0016316343IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
FYEVQKFYSI FLFLTCILQP LSVVDEQLIP RVGMTFKNLE DTAKFYKDYV KAVGFSTRVQ  60
STNKKGNEIK NQLITCSREG KWKFKISPTE KTNPTASVNC PARIYTHTLK DVGSWIISKV  120
VLHHSHPCCP TQAKMLKQHR ELSMSVRHTI ENNEETDIRP SKTFQSFVAA AVDRHIWVPI  180
YLDHHFWAGM KSTQRSKSMH SFFNNFITRN SSLIQFVKQY DNCLGSREQA ERESDAADFH  240
TVIPCATKSS IEAQFQDVYT HQKFREVQAQ FRRKANCITG LTNSALGYSV YEVREQVSSS  300
IFNKFVVTYD SVATEVKCQC LLFESRGILC HHALSVLSFE QVSQVSSRYI LDRWSKKVKR  360
RHTHIKSSHD EPLLEPRSKR FDKLVFRSQN ICKFASESEE LTAILHRAYD KVMVEMEELK  420
PKKKGTCSLS HEDANLESVN ELQSPPRIRT RGRPKNRLGS KLDKQIANAS KKKKIKDLNE  480
LNLFHAASVV HPNFSQYQGR VMNYQFREPA TVDKSGKHIL LYSGPPRPEV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.2Z7A8
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020997233.10.0protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A445AF030.0A0A445AF03_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.27e-29far-red elongated hypocotyls 3