PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.33SB5
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 422aa    MW: 48171.2 Da    PI: 7.1608
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.33SB5genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.82.4e-081772022248
                      T-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  22 gtWktIartmgkgRtlkqcksrwqkyl 48 
                      + W+ Ia++++ gR +kqc++rw+++l
      Aradu.33SB5 177 RKWSHIAQMLP-GRIGKQCRERWHNHL 202
                      46*********.*************97 PP
2Myb_DNA-binding54.82.2e-17210250345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       WT++Ed++l++a+ + G++ W+ Ia++++ gRt++++k++w+
      Aradu.33SB5 210 IWTEDEDKILIEAHVEIGNK-WAEIAKRLP-GRTENSIKNHWN 250
                      6*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.987163202IPR017930Myb domain
SMARTSM007179.1E-4167204IPR001005SANT/Myb domain
CDDcd001673.46E-8171202No hitNo description
Gene3DG3DSA:1.10.10.601.1E-17177210IPR009057Homeodomain-like
PfamPF139213.8E-7177208No hitNo description
SuperFamilySSF466893.29E-29182261IPR009057Homeodomain-like
PROSITE profilePS5129424.942203257IPR017930Myb domain
SMARTSM007174.4E-16207255IPR001005SANT/Myb domain
PfamPF002496.7E-16211250IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-21211255IPR009057Homeodomain-like
CDDcd001676.50E-13211253No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MQYSLTMKEI DLPFGVPNSS HGFYHDLHHH VDQFHQVNVN GNSSSSNHQV SLTNLDSFDV  60
YECKPFVENN NVHVMEDFQY NGGGFGNLNL TNNNNQSTPL DIIVGNQGYL PFYPLQETKL  120
TNLVVPDEVS SISTMGYYKR VNGVNKNNKL YPTSKKTYKL QKKSNIVKGQ WTESEDRKWS  180
HIAQMLPGRI GKQCRERWHN HLRPNIKKDI WTEDEDKILI EAHVEIGNKW AEIAKRLPGR  240
TENSIKNHWN ATKRRQYSKR KCRSKYPKAS LLQEYIKSLN LDKNPLMDYR RKSVNPRGNA  300
NKTSSAASSK APPPLSAAQP QPIGNNSQFS MSDRLVPSYD FNEVLPDFCF DENLFEGGCS  360
IDSLLDDIPC APIMDTSTIN VVDNGFECDD MQQEIVESMM EGDGIIKKEM DLVEMVTKVN  420
KN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-371662562104C-Myb DNA-Binding Domain
1msf_C2e-371662562104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.33SB5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015937738.10.0transcription factor MYB98-like
SwissprotQ9S7L22e-84MYB98_ARATH; Transcription factor MYB98
TrEMBLA0A445C2710.0A0A445C271_ARAHY; Uncharacterized protein
STRINGGLYMA05G02300.21e-146(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.16e-85myb domain protein 98
Publications ? help Back to Top
  1. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]