PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.35CN9

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 447aa MW: 50981.9 Da PI: 9.4834

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.35CN9	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.4	2e-17	11	97	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk +GFs+r++ ++++ +++i+++ +Cs+egk +++ + +++t+ + +C a++ ++ k g w ++k++l+H+H+++p Aradu.35CN9 11 KFYRNYAKAAGFSTRVRCTNRK--ENKIKNQLITCSREGKWKSKISL---AEKTNLTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 97 6*************988876..6669**********99887...8999**********998879*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.9E-15	11	97	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.198	234	270	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.8E-4	243	267	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.0E-4	245	272	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
MTFTTLEDAG KFYRNYAKAA GFSTRVRCTN RKENKIKNQL ITCSREGKWK SKISLAEKTN 60 LTAGLNCPAR IYIHTLKDVG AWIISKVVLD HSHPCCPSKA EMLKQHRELS MSIHRTIENN 120 DEADLYEDRH IWVPIYLDHH FWAGFVKQYD NCLGSREQAE RESDAANFHT FIPCATKSSI 180 EAPFQDAYTH AKFREVQAQF RGKANCITRL KNSALGYSIY EVGEQVSSLI FNKFAVTYDS 240 VAAEVKCQCL LFESRGILCR HALSVLSFEQ VSQVSPRYIL ERWSKKVKRR HTHIKSSNDE 300 PLMEPRSKRF DQLVFHSQNI CEFASESEEL TAILHRAYDN VMAEMEALKA KRKGKSSLSH 360 EDANLESVNE LQSPPRIRTR GRPKNRLGSK LEKQIANATK KKKTKVLSEI NLFDAASAAH 420 SNSSQYQGHV MNNQFRVPTA GDNSLDV

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

MTFTTLEDAG KFYRNYAKAA GFSTRVRCTN RKENKIKNQL ITCSREGKWK SKISLAEKTN  60
LTAGLNCPAR IYIHTLKDVG AWIISKVVLD HSHPCCPSKA EMLKQHRELS MSIHRTIENN  120
DEADLYEDRH IWVPIYLDHH FWAGFVKQYD NCLGSREQAE RESDAANFHT FIPCATKSSI  180
EAPFQDAYTH AKFREVQAQF RGKANCITRL KNSALGYSIY EVGEQVSSLI FNKFAVTYDS  240
VAAEVKCQCL LFESRGILCR HALSVLSFEQ VSQVSPRYIL ERWSKKVKRR HTHIKSSNDE  300
PLMEPRSKRF DQLVFHSQNI CEFASESEEL TAILHRAYDN VMAEMEALKA KRKGKSSLSH  360
EDANLESVNE LQSPPRIRTR GRPKNRLGSK LEKQIANATK KKKTKVLSEI NLFDAASAAH  420
SNSSQYQGHV MNNQFRVPTA GDNSLDV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.35CN9

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020997233.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A445B3W8	0.0	A0A445B3W8_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	5e-23	far-red elongated hypocotyls 3