PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.39N7S

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 275aa MW: 31889.8 Da PI: 10.2163

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.39N7S	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	41.4	4.9e-13	11	97	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++Y+k +GFs++++++++ ++i+++ vC++eg+ +++ + +t+++ + ++ v+ +k + w ++k++l+H+H+++p Aradu.39N7S 11 KFYKNYSKLAGFSTKIRNTTRD--GDKIKNQLIVCTREGRWKSKIYP---TLKTNPSAGLNYPTRIYVHIMKdVSLWTISKVVLNHSHPCCP 97 6**************98776..8889********9998877...8999999999999*9999899************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.2E-10	11	97	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	8.939	181	217	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0011	192	219	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MIFKTLEEAG KFYKNYSKLA GFSTKIRNTT RDGDKIKNQL IVCTREGRWK SKIYPTLKTN 60 PSAGLNYPTR IYVHIMKDVS LWTISKVVLN HSHPCCPDQA EMLKQHKELS MFVRRTIETY 120 EEARIRSSKT YQSLVAAARS HRELAAVRGS VYMDISLLGL PLLSRDEKHT KEVSNSTFNK 180 FIVTYDAVSR DVKCHCLLFE SRGILCRHSL SVLSFERVDN AAPKYILERW SKNIKKRHTH 240 IKSSQDEPLL EPRSKRFDKL VFRSHNICNF ASESE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.39N7S

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015960283.1	1e-130	protein FAR1-RELATED SEQUENCE 6-like
TrEMBL	A0A444XJR5	1e-138	A0A444XJR5_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	2e-12	far-red elongated hypocotyls 3