PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.3B8NW
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GRAS
Protein Properties Length: 446aa    MW: 50965.6 Da    PI: 6.3825
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.3B8NWgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS369.25.5e-113254373373
         GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                  +lL+ecA++v+sg+ ++a+ +L+ +s++ spdg + qR ++yf eALa++++++ +++ kal++s+    +  ee+ ++++f+e++P+lk ++ltaNq
  Aradu.3B8NW  25 DLLYECAKFVASGSIKNADIALEYISHQLSPDGAAAQRTVTYFSEALASKIVKNLPGVDKALNSSKRL--TAPEEILVQNYFYELFPFLKCAYLTANQ 120
                  58************************************************************988886..599************************* PP

         GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                   I++a+ege+ vHiiD+   +++QW++Ll +L++Rpegpp+lRiT +++    +ke l +++  L++ Ae+l+ p++fn+ ++++ledl++++L v++
  Aradu.3B8NW 121 VIVKAMEGEKIVHIIDLHCAEPVQWINLLMTLNERPEGPPHLRITSIHD----KKEVLDQMNASLTREAEKLDFPLQFNP-IVSTLEDLDIDSLPVRT 213
                  *************************************************....9**************************.79*************** PP

         GRAS 199 gEalaVnlvlqlhrll......................................................desvsleserdevLklvkslsPkvvvvv 242
                  gEala+++vlqlhrll                                                        s     + +++L+ +++l+Pk++v++
  Aradu.3B8NW 214 GEALAICSVLQLHRLLatddevlgrnspaatmnlhravhmnrrtfaewlerdmmnsyisspisalsppplYPSP----KMEAFLRDLRKLQPKLMVIT 307
                  ***************************************************************98655444444....4566**************** PP

         GRAS 243 eqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340
                  eqe+++n+ s++er+ +al++ysalfd+l++++ r+s er+kvE  llg++i+n++a eg+er+er e+le+W +rl+ aGF  +pl+++ +  ak +
  Aradu.3B8NW 308 EQETNLNGCSLVERVEKALYFYSALFDCLDSTVRRTSLERKKVESLLLGEQIKNIIASEGFERKERYEKLENWIRRLDLAGFVRLPLRDNDNLHAKEV 405
                  ************************************************************************************************** PP

         GRAS 341 lrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                  l++++ + y++ e +g+l+ +W drpL+s+SaW
  Aradu.3B8NW 406 LHNYGHK-YMIREGHGCLLVCWGDRPLFSISAW 437
                  *****77.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098549.0631419IPR005202Transcription factor GRAS
PfamPF035141.9E-11025437IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MDSGSPYQWI RELRFEDSNT LNPFDLLYEC AKFVASGSIK NADIALEYIS HQLSPDGAAA  60
QRTVTYFSEA LASKIVKNLP GVDKALNSSK RLTAPEEILV QNYFYELFPF LKCAYLTANQ  120
VIVKAMEGEK IVHIIDLHCA EPVQWINLLM TLNERPEGPP HLRITSIHDK KEVLDQMNAS  180
LTREAEKLDF PLQFNPIVST LEDLDIDSLP VRTGEALAIC SVLQLHRLLA TDDEVLGRNS  240
PAATMNLHRA VHMNRRTFAE WLERDMMNSY ISSPISALSP PPLYPSPKME AFLRDLRKLQ  300
PKLMVITEQE TNLNGCSLVE RVEKALYFYS ALFDCLDSTV RRTSLERKKV ESLLLGEQIK  360
NIIASEGFER KERYEKLENW IRRLDLAGFV RLPLRDNDNL HAKEVLHNYG HKYMIREGHG  420
CLLVCWGDRP LFSISAWSFR GLNLSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-482944025381Protein SCARECROW
5b3h_A4e-482944024380Protein SCARECROW
5b3h_D4e-482944024380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.3B8NW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015952945.10.0scarecrow-like protein 3
SwissprotQ9LPR81e-145SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A445A7140.0A0A445A714_ARAHY; Uncharacterized protein
STRINGXP_004513385.10.0(Cicer arietinum)
STRINGGLYMA11G20980.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-146scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]