PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.3T2FW

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 448aa MW: 51701.6 Da PI: 7.7283

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.3T2FW	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	47.4	6.4e-15	51	137	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk +GFs+r++ ++++ +ei+++ +Cs+egk +++ + +++t+++ + a++ ++ k + w ++k++l+H+H+++p Aradu.3T2FW 51 KFYRDYAKAAGFSTRVRCTNRK--GNEIKNQLITCSREGKWKSKISP---TEKTNPTAGLNYPARIYIHTLKdVSAWIISKVVLDHSHPCCP 137 6*************998776..8889*********999877...899999********998879*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.5E-12	51	137	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.198	308	344	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.8E-4	317	341	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.0E-4	319	346	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence Send to blast
MDHSTSDYQL NPGEVDYEFE SNEVPEPLSV VDNELVPKVG MTFTTLEDAG KFYRDYAKAA 60 GFSTRVRCTN RKGNEIKNQL ITCSREGKWK SKISPTEKTN PTAGLNYPAR IYIHTLKDVS 120 AWIISKVVLD HSHPCCPSKA EMLKQHRELS MSIRRTIENN EEAVCVWVYY ADLYEDRHIW 180 VPIYLDHHFW AGMRSTQRSE SMHSFFNKYI TRNSSLIQFV KQYDNFLGSR EQAERESDAA 240 DFHTVIPCAT KSSIEAQFQD AYTHAKFMEV QVQFRGKANC ITRLKNFALG YSIYEVGEQV 300 SSSIFNKFAV TYDSVAAEVK CQCLLFESRG ILCRHALSVL SFEQVSQVCP RYILERWSKK 360 VKRRHTHIKS SHDESVMEPR SKRFDQLVFR SQNICEFASE SEELTAILHP ITTNAPSGKQ 420 EQKSEGLPHF NSVLFYLAYK MRQMADTI

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence Send to blast

MDHSTSDYQL NPGEVDYEFE SNEVPEPLSV VDNELVPKVG MTFTTLEDAG KFYRDYAKAA  60
GFSTRVRCTN RKGNEIKNQL ITCSREGKWK SKISPTEKTN PTAGLNYPAR IYIHTLKDVS  120
AWIISKVVLD HSHPCCPSKA EMLKQHRELS MSIRRTIENN EEAVCVWVYY ADLYEDRHIW  180
VPIYLDHHFW AGMRSTQRSE SMHSFFNKYI TRNSSLIQFV KQYDNFLGSR EQAERESDAA  240
DFHTVIPCAT KSSIEAQFQD AYTHAKFMEV QVQFRGKANC ITRLKNFALG YSIYEVGEQV  300
SSSIFNKFAV TYDSVAAEVK CQCLLFESRG ILCRHALSVL SFEQVSQVCP RYILERWSKK  360
VKRRHTHIKS SHDESVMEPR SKRFDQLVFR SQNICEFASE SEELTAILHP ITTNAPSGKQ  420
EQKSEGLPHF NSVLFYLAYK MRQMADTI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.3T2FW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020997233.1	1e-161	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A445A850	0.0	A0A445A850_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	1e-35	far-red elongated hypocotyls 3